Streptomyces phytohabitans: ABXR15_16785
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Entry
ABXR15_16785 CDS
T10861
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spih Streptomyces phytohabitans
Pathway
spih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABXR15_16785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spih03400
]
ABXR15_16785 (mfd)
Enzymes [BR:
spih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABXR15_16785 (mfd)
DNA repair and recombination proteins [BR:
spih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABXR15_16785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XCX50653
LinkDB
All DBs
Position
4022712..4026299
Genome browser
AA seq
1195 aa
AA seq
DB search
MSLHGLLDAVVRDPALEEAVKAATAGHRPHLDLIGPPAARPFVISALARGAGRPVLAVTA
TGREAEDLAAALRSLMPAGREDAVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDP
RDPTTGPVSVVVAPVRSVLQPQVKGLGDLVPVALRQGESHDLAEVVEGLAAAAYARVELV
EKRGEFAVRGGILDVFPATEEHPLRVEFWGDEIEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTEDVRARAATLAERHPELDELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPSGS
MAVVCDPERVRTRAADLVATSQEFLEASWAATAGGGEAPIDVGAASLWGIADVRERAREL
DMAWWSVSPFGTDVAAAEQAADGSGPDAVPGLDDALQLGMRAPESYRGDTARALADTKGW
LSDGWRCVYVTEGHGPGARTVEVLGGEGIAARLDTDLEQLAPSVVQVARGSLDSGFIDAS
LKLAVLTETDLSGQKAASKELGRMPARRRKTIDPLTLQPGDFIVHEQHGVGRYVEMVQRT
VQGATREYLLVEYAPAKRGQPGDRLFVPTDQLEQITKYVGGEQPSLHRLGGADWTKTKAR
AKKAVKEIAADLIKLYSARMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIGEVKEDM
EKSVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFSTFTERYGQF
PVRVRALSRFQSDTEAKAVVEGLRDGSVDVVIGTHRLFSSETKFKELGLVIVDEEQRFGV
EHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEER
QISAAVRRELLREGQVFYIHNRVDSIERAAARLRQAVPEARVAIAHGQMSEAALEQVVLD
FWEKRFDVLVSTTIVENGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLY
PPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYV
RMVGEAVADYRAALESGGEVEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIAAAGS
EEDIAAVREELTDRYGPLPEPVENLLLVAGLRMLARSCGVTDITLQGPNVRFGPVELRES
QELRLKRLYPRSVIRQTAGQVLVPRPKPSGIGGKPVVGRELLAWVGEFLTTIPGA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggcctgctcgatgccgtcgtacgcgaccctgccctggaagaggccgtc
aaggccgccaccgccggtcaccggccgcatctcgacctcatcgggccgccagccgcccgc
ccgttcgtgatctccgcgctggcccgcggcgccgggcgccccgtgctcgccgtgaccgcg
accggccgcgaggcggaggacctggcggcggcgctgcgttcgctgatgcccgcgggccgg
gaggacgcggtcgtggagtacccgtcgtgggagacgctgccgcacgagcggctgagcccg
cgcagcgacaccgtcgggcgccgtctcgccgtgctgcgccgcctcgcccacccggacccg
cgcgacccgacgacgggccccgtgagcgtggtcgtggcacccgtgcgctccgtgctccag
ccgcaggtcaagggcctcggtgacctggtgcccgtggcgctgcggcagggcgagagccac
gacctggcggaggtcgtcgaggggctggcggccgcggcgtacgcccgggtggaactggtc
gagaagcgcggcgagttcgcggtccgcggcggcatcctcgacgtcttcccggcgacggag
gagcacccgctgcgggtggagttctggggcgacgagatcgaggagatccgctacttcaag
gtggcggaccagcgttcgctggaggtggccgagcacggcctgtgggcgccgccctgccgc
gagctgctgctcacggaggacgtacgtgcccgcgccgccaccctcgccgaacgccacccg
gagctggacgagctgctggggaagatcgccgagggcatcgccgtcgagggcatggagtcc
ctggcgcccgtcctggtggacgagatggagctgctgctcgacgtgctgccgtccggcagc
atggccgtggtgtgcgacccggagcgggtgcggacgcgcgcggcggacctcgtcgccacc
agccaggagttcctggaggcgtcctgggcggcgaccgcgggcggcggtgaggccccgatc
gacgtgggcgcggcctcgctgtggggcatcgcggacgtacgggagcgggcccgcgagctg
gacatggcgtggtggtcggtgagcccgttcggcacggacgtcgccgcggcggagcaggcc
gccgacggttccggtccggacgccgtgccgggtctggacgacgcgctccagctgggcatg
cgcgccccggagtcgtaccggggcgacaccgcccgcgccctcgccgacaccaagggctgg
ctgtccgacggctggcgctgcgtgtacgtgacggagggccacggccccggcgcccgtacg
gtcgaggtcctcggcggcgagggcatcgcggcccgcctggacaccgacctggagcagctc
gccccctccgtggtgcaggtcgcgcgaggctcgctggacagcggcttcatcgacgcgtcg
ctgaagctggcggtcctgacggagaccgacctgtcgggccagaaggccgccagcaaggag
ctgggccggatgcccgcccggcgccgtaagacgatcgacccgctgacgctccagccgggc
gacttcatcgtgcacgagcagcacggcgtcgggcgttacgtggagatggtgcagcggacc
gtgcagggcgccacccgcgagtacctgctggtggagtacgcgcccgcgaagcgcggccag
cccggcgaccggctgttcgtgcccacggaccagctggagcagatcaccaagtacgtcggc
ggggagcagccgtccctgcaccggctcggcggcgcggactggacgaagacgaaggcgcgc
gcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctgtactcggcgcggatg
gccgcccccggccacgcgttcggcgcggacacgccctggcagcgggagctggaggacgcg
ttcccgtacgcggagacgccggaccagctgacgacgatcggcgaggtcaaggaggacatg
gagaagtcggtcccgatggaccggctggtctgcggtgacgtgggctacggcaagacggag
atcgcggtgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtg
ccgacgacgctgctggtgcagcagcacttctcgacgttcacggagcggtacgggcagttc
cccgtacgggtgcgggcgctgtcgcggttccagtcggacacggaggcgaaggccgtcgtg
gaggggctgcgggacggttccgtggacgtggtcatcggcacgcaccggctgttctcgtcg
gagacgaagttcaaggagctgggtctcgtcatcgtcgacgaggagcagcgtttcggcgtc
gagcacaaggagcagctgaagaagctgcgggccaacgtggacgtgctgacgatgtcggcc
acgcccatcccgcgcacgttggagatggccgtcaccggtatccgcgagatgtcgaccatc
accacgccgccggaggagcggcacccggtgctcaccttcgtcggaccgtacgaggagcgg
cagatcagcgccgccgtccggcgcgaactgctccgcgagggccaggtgttctacatccac
aaccgcgtcgactccatcgagcgcgccgcggcccggctgcggcaggcggtgccggaggcg
cgggtggcgatcgcgcacgggcagatgtcggaggcggcgctggagcaggtggtgctggac
ttctgggagaagcggttcgacgtcctggtgtcgaccacgatcgtggagaacggcatcgac
atctcgaacgcgaacaccctgatcgtcgagcgcggcgacaacttcggcctgtcgcagctg
caccagctgcgcggccgggtgggccgtggccgcgaccgcgggtacgcgtacttcctctac
cccccggagaagcccctcaccgagaccgcccacgagcggttggcgacgatcgcgcagcac
acggagatgggcgcgggcatgtacgtcgcgatgaaggacctggagatccgcggcgcgggc
aacctcctgggcggcgagcagtccgggcacatcgcgggtgtcggcttcgacctgtacgtc
aggatggtcggtgaggccgtcgcggactaccgcgcggcgctggagtccggcggcgaggtg
gaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccgcacgac
tacgcgccgggcgagcggctgcgcctccaggcgtaccgtgcgatcgccgccgcgggctcc
gaggaggacatcgcggcggtacgggaggagctgacggaccgttacggcccgctgccggag
ccggtggagaacctgctgctggtcgccgggctgcggatgctggcccgttcgtgcggtgtc
acggacatcacgctccagggccccaacgtgcggttcggccccgtggagttgcgggagtcg
caggagctgcggctgaagcggctgtatccgcgttcggtgatccggcagaccgcgggccag
gtcctggtgccccgcccgaagccgtccggtatcggcgggaagccggtggtggggcgtgaa
ctgctcgcgtgggtgggcgagttcctgacgacgatcccgggcgcgtag
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