Streptomyces phytohabitans: ABXR15_21945
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Entry
ABXR15_21945 CDS
T10861
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spih Streptomyces phytohabitans
Pathway
spih03030
DNA replication
spih03430
Mismatch repair
spih03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABXR15_21945 (dnaE)
03430 Mismatch repair
ABXR15_21945 (dnaE)
03440 Homologous recombination
ABXR15_21945 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spih03032
]
ABXR15_21945 (dnaE)
03400 DNA repair and recombination proteins [BR:
spih03400
]
ABXR15_21945 (dnaE)
Enzymes [BR:
spih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABXR15_21945 (dnaE)
DNA replication proteins [BR:
spih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABXR15_21945 (dnaE)
DNA repair and recombination proteins [BR:
spih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABXR15_21945 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol3_alpha_C
Motif
Other DBs
NCBI-ProteinID:
XCX51554
LinkDB
All DBs
Position
complement(5236991..5240533)
Genome browser
AA seq
1180 aa
AA seq
DB search
MTDQQFTHLHVHTQYSLLDGAARLKDMFNACNEMGMSHIAMTDHGNLHGAYDFFHQAKKA
GVTPVMGIEAYLAPESRRSARPVKWGTPHQKRDDVSGNGAYTHMTMWARDAVGLHNLFRA
QSRASLEGFFRKPRMDKELLAECAEGLMATTGCPSGEVSTRIRLDQMDEALKAAGEYQDI
FGKENFFVELMDHGIDIDKRARDGLEEIARKLDAPFVVTNDSHYTYESEASAHDTLLCIQ
TGNNLSNPDRFRFDGAGYFLKSAAEMYAIDNSDAWQEGCRNTQLLIAQRVDTEGMFATRN
LMPRFDVPDGFTEVTWFREEVQRGMARRYPDGVPEDRQKQADYEMDIIVEMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVSYAMGITDLDPIDHGLIFERFLNPERVSMPDVDI
DFDERRRGDVIRYVTEKYGADKVAMIGTYGTIKAKAAIKDASRVLGYPYAMGDRITKAMP
ADVLGKGIPLSGILDKDHPRYSEAGEVRSMYENEPDVTKVIDAARGIEGLVRQMGVHAAG
VIMSSEKLIDHVPVFSPKNDGTVVTQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKLIKK
NKGVELTLLDLTLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHINYALRKNGQQEITPIHPELEEPLREVLGITHGLIVYQEQVQKAAQVLAG
YSLGQADLLRRAMGKKKQEVLDAEFVNFQQGARDKGYSDEAIQAVWDVLVPFAGYAFNKA
HSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRKMGIKVLPPDVNES
EGNFTPRGDDTIVFGLTAVRNVGNNVVDSIVKCRRAKGAYASFPDFLDKVEAVVCNKRTV
ESLIKAGAFDAMGHTRKGLTAHFETMIDNVVQVKRKEAEGQFDLFGGMGDDTGDDSPSFG
LDVEFSDVEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLNDKADAAIAQLTGGDYSDGSI
VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLDCMFFPATYQLVSTQLVEDAVVFVKGR
LDKREDVPRLVAMELMIPDLSEASANAPVTITIPSVKITPPLVAKLGEVLTHHRGATEVR
VKLQGTRRTTVLRLDRHRVTVDPALFGDLKQLLGPACLAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaccagcagttcacacacttgcatgtgcacactcagtattcgctgctggacggt
gccgcccgcctcaaggacatgttcaacgcgtgcaacgagatgggcatgtcgcacatcgcg
atgaccgaccacgggaatctgcacggggcgtacgacttcttccaccaggccaagaaggcc
ggtgtcaccccggtgatgggcatcgaggcgtatctggcgccggagtcgcggcgcagcgcg
cgcccggtcaagtggggcaccccgcaccagaagcgggacgacgtctcgggcaacggggcg
tacacgcacatgacgatgtgggcgcgtgacgccgtcggtctgcacaacctcttccgcgcc
cagtcacgggccagcctggagggcttcttccggaagccgcgcatggacaaggagttgctc
gcggagtgcgccgagggtctgatggcgacgaccggctgcccgtccggcgaggtgagcacc
cgcatccggctggaccagatggacgaggcgctgaaggccgccggtgagtaccaggacatc
ttcggcaaggagaacttcttcgtcgagctgatggaccacggcatcgacatcgacaagcgg
gcgcgggacggcctggaggagatcgcccgcaagctggacgcgccgttcgtcgtcacgaac
gactcgcactacacgtacgagagcgaggcgtccgcgcacgacaccctgctgtgcatccag
acgggcaacaacctgtcgaacccggaccgtttccggttcgacggcgcgggctacttcctg
aagtcggccgcggagatgtacgcgatcgacaactccgacgcgtggcaggagggttgccgc
aacacccagctcctcatcgcccaacgggtcgacacggagggcatgttcgccacacggaac
ctgatgccccgcttcgacgtgcccgacggcttcaccgaggtgacctggttccgcgaggag
gtgcagcgcgggatggcccgccgttacccggacggcgtgccggaggaccggcagaagcag
gccgactacgagatggacatcatcgtcgagatggggttcccgggatacttcctggtcgtc
gccgacttcatcatgtgggccaagaacaacggcatcgcggtgggccccgggcgcggttcg
gcggcgggctcgatcgtgtcgtacgcgatgggcatcaccgacctcgacccgatcgaccac
ggcctgatcttcgagcggttcctcaaccccgagcgcgtctccatgcccgacgtcgacatc
gacttcgacgagcgcaggcgcggtgacgtcatccggtacgtcacggagaagtacggcgcc
gacaaggtcgccatgatcggcacgtacggcacgatcaaggccaaggccgcgatcaaggac
gcctcccgcgtcctgggctacccgtacgcgatgggcgaccggatcaccaaggcgatgccc
gccgacgtcctcggcaagggcatcccgctgtccggcatcctcgacaaggaccacccgcgg
tacagcgaggcgggcgaggtccgctcgatgtacgagaacgagccggacgtcaccaaggtc
atcgacgccgcgcggggcatcgagggcctggtccggcagatgggcgtgcacgccgcgggc
gtgatcatgtccagcgagaagctgatcgaccacgtgccggtcttctccccgaagaacgac
ggcaccgtcgtcacccagtgggactacccgagctgcgagtcgctcggcctgctgaagatg
gacttcctgggcctgcggaatctcacgatcatggatgacgcggtcaagctcatcaagaag
aacaagggcgtggagctgaccctcctcgacctgaccctggacgacccgaagaccttcgaa
ctgctctgtcgcggcgacacgttgggcgtcttccagttcgacggcggcccgatgcggtcc
ctgctgcggctgatgaagcccgacaacttcgaggacatctccgccgtctcggcgctctac
cgccccggcccgatgggcatgaactcgcacatcaactacgccctccggaagaacgggcag
caggagatcaccccgatccacccggagctggaggagccgctccgggaggtcctgggcatc
acccacggcctgatcgtctaccaggagcaggtgcagaaggccgcgcaggtcctcgcgggc
tactccctgggccaggccgacctgctgcgccgcgcgatgggcaagaagaagcaggaggtc
ctggacgccgagttcgtcaacttccagcagggcgcccgcgacaaggggtactcggacgag
gcgatccaggccgtctgggacgtgctggtccccttcgcggggtacgccttcaacaaggcg
cactcctcggcgtacggcctggtcacgtactggaccgcctatctgaaggcgaactacccc
gcggagtacatggccgcgctgctcacctcggtgcgcgacgacaaggacaagtcggcggtc
tacctcaacgagtgccggaagatgggcatcaaggtgctcccgccggacgtgaacgagtcc
gagggcaacttcaccccgcgcggcgacgacaccatcgtcttcggcctgaccgccgtgcgg
aacgtcgggaacaacgtggtggactccatcgtcaagtgccgccgcgcgaagggcgcctac
gcctcgttccccgacttcctcgacaaggtcgaggcggtcgtctgcaacaagcggaccgtc
gagtcgctgatcaaggcgggcgcgttcgacgccatgggccacacccgcaagggcctgacc
gcgcacttcgagaccatgatcgacaacgtggtgcaggtcaagcggaaggaggccgagggg
cagttcgacctcttcggcgggatgggcgacgacacgggcgacgactcgccctcgttcggc
ctcgacgtcgagttctcggacgtcgagtgggagaagacgtacctcctggcgcaggaacgg
gagatgctcggcctgtacgtctcggaccacccgctgttcggcctggagcacgtcctcaac
gacaaggccgacgcggccatcgcacagctcaccggcggggactactcggacggctcgatc
gtcacgatcggcggcatcatctccggcctccagcggaagatgaccaagcagggcaacgcc
tgggccatcgccacggtggaggacctggccggttcgctggactgcatgttcttccccgcc
acgtaccagctggtctccacccaactcgtggaggacgccgtggtgttcgtgaaggggcgc
ctcgacaagcgcgaggacgtgccgcgcctggtcgccatggagctgatgatcccggacctg
agcgaggcgtcggccaacgccccggtgacgatcaccatcccgtcggtcaagatcactccc
ccgctggtggcgaagctgggcgaggtcctcacccaccaccggggcgccacggaggtccgg
gtcaagctccaggggacgcggcgtacgacggtgctccggctggaccggcaccgcgtgacc
gtggacccggcgctcttcggcgatctgaagcaactgctgggcccggcctgcctggcgggc
tga
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