KEGG   Sphingomonas piscis: G7077_06245
Entry
G7077_06245       CDS       T07460                                 
Name
(GenBank) CDC48 family AAA ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
spii  Sphingomonas piscis
Brite
KEGG Orthology (KO) [BR:spii00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    G7077_06245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spii03019]
    G7077_06245
   03009 Ribosome biogenesis [BR:spii03009]
    G7077_06245
   04131 Membrane trafficking [BR:spii04131]
    G7077_06245
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:spii04147]
    G7077_06245
Messenger RNA biogenesis [BR:spii03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     G7077_06245
Ribosome biogenesis [BR:spii03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    G7077_06245
Membrane trafficking [BR:spii04131]
 SNARE
  SNARE associated proteins
   Others
    G7077_06245
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    G7077_06245
Exosome [BR:spii04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   G7077_06245
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N AAA_16 RuvB_N AAA_5 AAA_22 CDC48_2 AAA_33 AAA_2 AAA_14 TIP49 IstB_IS21 nSTAND3 AAA_28 NACHT NPHP3_N AAA_18 RNA_helicase Mg_chelatase AAA_24 DUF815 AAA_30 AAA_11 Sigma54_activat AAA_7 AAA_19 AAA_3 Vps4_C AAA_17 ABC_tran TsaE Zeta_toxin NB-ARC Parvo_NS1 ATPase bpMoxR MazE_antitoxin
Other DBs
NCBI-ProteinID: QIK78557
UniProt: A0A6G7YPA1
LinkDB
Position
complement(1268806..1271124)
AA seq 772 aa
MADVETVDRTKARKVQVANLSPAEHGRGFARLPARLMSELGLSEGDVIEIVGSKTTAARA
LRPYDEDEGIDIIRLDGLQRANAGVGSGDYVEVRKGQSTAATRVVFAPAAPNMRLEGSSA
ALQRSFAGRPLTEGDVVATTGHQRVNADMPDHIRQLLNAPAFALQELKLIVVSTAPKGIV
HIDAKTQVELLSEYKEPDQADRRADVTYDDLGGMRGTIDALREMVELPLRHPELFQRLGV
DPPKGVLLHGPPGTGKTRLARAVANESAARFFHIAGPEVMGSAYGESEKRLRELFEEAAK
AAPSIIFIDEIDSIAPKRGQVTGEAEKRLVAQLLTLMDGLEPRQNLVVIAATNRPEAIDE
ALRRPGRFDREIVVGVPDEPGRREILGIHTRGMPLDGGVSLEDLSRRTYGFVGADLAALV
REAALEAVRRIMPELDLSEQTIPTEILDRLSVNGSDFENALKRVQPSAMREVMVEAPRVG
WDDIGGLDEARDKLREGVELPLKHPEAFRRIGIRPAKGFLLYGPPGTGKTLLAKAAARES
QANFIATKSSDLLSKWYGESEQQIARLFARARQVAPTIIFFDELDSLVPARGGGLGEPQV
TERVVNTILAEMDGLEELQNVVVIGATNRPNLIDPALLRPGRFDELIYVGTPDTAGRRRI
LAIHTEGMPLAADVDLDSLARRSERFTGADLEDLVRRAGLHALRRGLEEAQVTMADFEAA
LTDTRASVTEQMEEEYARIQSTLKSDAVRPNGGIGFVLPGTMRSRPGGKGDE
NT seq 2319 nt   +upstreamnt  +downstreamnt
atggccgacgtcgaaaccgttgaccggaccaaggcccgcaaggtgcaggtggcgaacttg
tcaccggctgagcatggccgcgggttcgcccggctgccggcccggctgatgagcgagctc
ggcctgtcagaaggcgacgtgatcgagatcgtcggcagcaagaccacggcggcgcgagcg
cttcgtccctacgacgaagacgagggcatcgacatcatccgcctcgacggcctgcagcgc
gccaatgccggcgtcggcagcggcgattatgtcgaagtgcgcaagggccagtccactgcc
gcgacccgcgtggtgttcgcgcccgccgcgcccaacatgcggcttgaaggctcgtcggcg
gcgttgcagcgcagcttcgcgggccgcccgctgaccgaaggcgatgtggtcgcgaccacg
ggccaccagcgggtgaatgccgacatgcccgaccatatccggcagctgctgaacgcgccg
gcgttcgcgctccaggagctgaagctgatcgtcgtttcgaccgcgcccaaaggcatcgtc
cacatcgatgcaaagacgcaggtcgagctgctttccgagtataaggaaccggatcaggcg
gaccgccgcgccgatgtcacttacgacgacctcggtggcatgcgcgggacgatcgatgcg
ctgcgtgagatggtcgaactaccgctgcgccatcccgaattgttccagcgtctcggcgtc
gatccgcccaagggcgtgctgcttcacggccctcccggcaccggcaagacccgtctggca
cgcgcggtggcgaacgaaagcgctgcgcgtttcttccacatcgctggccccgaggtgatg
ggttcggcctatggcgagagcgaaaagcgcctccgcgaattgttcgaggaagcggccaag
gcggccccctccatcatcttcatcgacgagatcgattcgattgcgcccaagcgcgggcag
gtgaccggcgaggcggagaaacgcctggtggcgcagctgctgacgctgatggacgggttg
gagccgcggcagaacctggtggtgattgcggcgaccaaccggccggaagcgatcgacgag
gcgcttcggcggccgggccggttcgatcgcgagatcgtggtcggtgttcccgacgagccg
gggcggcgcgagatcctaggcattcacacccgcggcatgccgctggatggaggagtcagt
ctcgaggatctgtcgcggcggacgtacggcttcgtcggcgccgacctggcggcgctggtg
cgggaggcggcgctggaggcagtgcggcggatcatgccggaactcgacctttccgagcag
accattccgaccgagatcctcgacagattgtcggtgaacgggtccgacttcgagaatgct
ttaaagcgtgtgcagccctcggcgatgcgggaggtgatggtcgaagcgccccgcgtcggc
tgggacgatatcggcggtctcgacgaagcgcgcgacaagttgcgcgagggcgtcgaactg
ccgctgaagcatccggaggcgttccgccgcatcggcatccgcccggcaaagggcttcctg
ctttacggcccgcccggcaccggcaagactctgctggcgaaggctgcggcgcgggagagc
caggccaatttcatcgcgaccaaatcgtcggacctgctcagcaaatggtatggcgagagc
gagcagcagatcgcccgcctgttcgcccgcgcgcggcaggtggcgcccacgatcatcttc
ttcgacgaactggacagcctggtgccggcgcgcgggggcgggctgggtgagcctcaggtt
accgagcgggtggtgaacaccatcctggcggagatggacgggctggaggagcttcagaat
gtcgtcgtcatcggcgcgactaatcggccgaacctgatcgatccggcgttgcttcggcca
gggcgtttcgacgagctcatctatgtcggcacgccggacaccgccgggcgcaggcgaatc
cttgccatccacactgaaggcatgccgctggcagcggacgttgatctggattcgctggct
cggcgctccgaacggttcaccggtgccgaccttgaggatctggtccggcgcgccggcctc
cacgcgttgagacgcggactggaggaggcgcaggtgacaatggcggacttcgaggcggcg
ctgaccgatacccgcgcctccgtcactgagcagatggaagaggaatatgcgcggatccag
tcgacgctgaagagcgatgcggtaaggcccaatggtggaatcggcttcgtgctgccggga
acgatgcggtcgcggcccggcggcaagggcgacgagtga

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