Sphingomonas piscis: G7077_11055
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Entry
G7077_11055 CDS
T07460
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spii
Sphingomonas piscis
Pathway
spii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G7077_11055 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spii03021
]
G7077_11055 (rpoC)
03400 DNA repair and recombination proteins [BR:
spii03400
]
G7077_11055 (rpoC)
Enzymes [BR:
spii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G7077_11055 (rpoC)
Transcription machinery [BR:
spii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G7077_11055 (rpoC)
DNA repair and recombination proteins [BR:
spii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G7077_11055 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QIK79361
UniProt:
A0A6G7YRJ9
LinkDB
All DBs
Position
complement(2171081..2175361)
Genome browser
AA seq
1426 aa
AA seq
DB search
MNELTNFANPVAKPEMFDQIKIGISSPEKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYVVIEPGLTALEKYQLLTEDELLAAQDEYGEDAFSAG
IGAEAVKIMLMDLDLEGERTQLLEELATTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEKDGEPGQGSMLSDMAEVHQALAA
GAVTLHSKIVSRVPQTDEAGKQYMKRFETTPGRMLLGETLPKSHKVPFETVNRLLTKKEI
GDVIDTVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMVIPAAKEPLVEETRALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDRVAGEMMKEISATPKGDDGREKPVNSIYMM
AHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDAVIIEEDCGTDQALEMRAIVQGGAVIASLAERILGRTTA
EDIVDAKTGDVFIQEGTLLDEPMVARIEELGVQGVKIRSPLVCAAKQGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGTIEFRDMPTI
TNPRGQHVSLSRSGEIAILDMDGRELSTHRVPYGAHLLCDSGHIVSRGDRIAEWDPSFSP
VITEKAGTVKYQDLIENRTMTEQVDESTGIAQRVVTDDNAKSKKDTLAPRLTLTGSDASD
AGVYRMAPGAIVAVEDGQQVEAGEVLARMPREAARTRDITGGLPRVAELFEARKPKENAI
IAKVSGKVSFRKDYKAKRKIAIVPDDGSEAVEYLVPKSKVIDVQEGDYVKRGDNLVGGSP
DPHDILEVLGVVALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTLL
AGEQVDREEMDDLNSKLGKGKKPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTEAS
VQGKVDTLNGLKENVIVGRLIPAGTGAGMNRLRVAATSRDTALRAAQRRMAEALVAPDSA
EELRAAELARSARDDAGTGDDPLGAVAPSGHGTDADAGDYLQESEA
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactcaccaatttcgcgaacccggtggccaagccggagatgttcgaccagatc
aagatcggcatctcgtcgcccgagaagatccgcagctggtccttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagccggagcgtgacggcctgttctgcgcgcgc
attttcggtccgatcaaggactacgagtgcctgtgcggcaaatataagcggatgaagtac
aagggcatcgtctgcgaaaagtgcggtgtcgaagttaccgtctccaaggtccgccgcgag
cgcatgggccacatcgagctggcggctccggttgcccacatctggttcctgaagtcgctt
ccgagccgcatcggcctgctgctcgacatgcagctgaagcagctggagcgcgtgctctac
ttcgagagctatgtcgtgatcgagccgggcctgaccgcccttgagaagtatcagctcctc
accgaggacgagcttctcgccgctcaggacgaatatggcgaggacgccttctcggccggt
atcggcgcggaagccgtcaagatcatgctgatggacctcgacctcgaaggcgagcgcacc
cagcttcttgaagagcttgcgaccaccaagtcggagctgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgagagcttcctggagtccggcaaccgtccggagtggatgatcctg
gacgtcgttccggtcatcccgccggagcttcgcccgctggttccgctggacggcggccgc
ttcgcgacgtcggacctcaacgacctctatcgccgcgttatcaaccgcaacaaccgcctg
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctt
caggaagcggttgacgccctgttcgacaacggtcgccgcggccgcaccatcacgggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcaccggtccg
gagctgaagcttcaccagtgcggccttccgaagaagatggccttggagctgttcaagccg
ttcatctactcgcgtctcgacgccaagggtctctccatgaccctgaagcaggcgaagaag
tgggtcgagaaagagcgcaaggaagtctgggacatcctcgacgaggtgatccgggagcat
ccggtgcttctgaaccgcgccccgacgcttcaccgcttgggcattcaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgccttcaacgcc
gacttcgacggcgaccagatggccgtccacgttccgttgagccttgaggcgcagctggaa
gcgcgcgtgctgatgatgtccaccaacaacatcctcagccccgctaacggcaagccgatc
atcgtgccgtcgcaggacatggttctgggtctctattacctttcgatggagaaggacgga
gagccgggccagggttcgatgctgtcggacatggccgaagtgcaccaggcgcttgccgcc
ggtgccgtgacgcttcactccaagatcgtcagccgcgtcccccagacggacgaggccggc
aagcagtatatgaagcgcttcgagacgacgcctggccgcatgctgctcggtgagactctg
ccgaagagccacaaggtgccgttcgagacggtcaaccgcctgctgaccaagaaggagatc
ggcgacgtcatcgacaccgtctatcgccacaccggtcagaaggagacggtgctgttcgcg
gacgccatcatggcgcttggcttccgccacgcgttcaaggccggcatctcgttcggcaag
gacgacatggtcatcccggctgcgaaggagcctctggtcgaggaaacccgcgcactcgtg
aaggattacgagcagcagtatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggtcgcgttgcggtgaccgcgttgccggcgagatgatgaaggaaatc
tcggcgactccgaagggcgacgatggccgcgagaagccggtcaactccatctacatgatg
gctcactccggtgcccgtggttcgcaggcgcagatcaagcagctggcgggtatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgagtatttcaactcgacccacggtgcccgtaagggtctcgcggac
acggcgctcaagacggcaaactcgggttacctgacccgccgtctcgtggacgtgagccaa
gacgccgtgatcatcgaggaggattgcgggaccgatcaggcgttggaaatgcgcgcgatc
gttcagggcggtgcagtgatcgcctcgcttgcggagcgtatccttggccgtaccacggcg
gaggacatcgtcgacgccaagaccggcgacgtcttcatccaggaaggcacgctgctcgac
gagccgatggtggcgaggatcgaggagcttggcgtccagggcgtcaagatccgttcgccg
ctggtctgcgccgccaagcagggcgtttgcggcaagtgctacggacgtgacctcgcccgc
ggtacgccggtcaacatcggtgaagcggtcggcgtcattgccgcccagtcgatcggtgag
ccgggcacgcagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgag
cagtcgaacctcgaggcgccggtcgacggcaccatcgagttccgcgacatgccgacgatc
accaacccgcgcggccagcatgtctcgctgtcgcgttcgggcgagatcgcgatcctcgac
atggacgggcgcgagctgtcgacgcaccgcgtgccttatggtgcgcacctgctgtgcgac
agcggccacatcgtcagccgtggcgaccgtattgccgaatgggacccctcgttcagcccg
gttatcaccgaaaaggccggtacggtgaagtatcaggacctgatcgagaaccgcacgatg
acggagcaggtggatgagtcgaccggcatcgcgcagcgcgtggttaccgacgacaatgcc
aagtccaagaaggacacgcttgcgccgcgcctgaccctgacggggtcggatgcgtcggac
gccggtgtgtaccggatggcgcctggcgcgatcgtcgcggtcgaggacggccagcaggtc
gaagccggcgaagtgctcgcccgtatgccgcgggaagccgcccgtacgcgcgacatcacc
ggcggtctgccgcgggtcgccgagctgttcgaggcccgcaagcccaaggagaatgcgatc
atcgcaaaggtctcgggcaaggtctcgttccgtaaggactataaggccaagcgcaagatc
gcgatcgttccggacgacggttcggaggcagtcgaatatctggtgccgaagtcgaaggtc
atcgacgtccaggaaggcgattatgtgaagcgcggcgacaatctcgtcggcggttcgccc
gatccccacgacatcctggaagtcctgggcgtcgtcgcactggccgaatatctcgtcagc
gagatccaggaggtttaccgactgcagggcgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggtcgagatcaccgacggtggcgacaccaccctgctg
gccggcgaacaggtcgaccgcgaggagatggacgacctcaactccaagctcggcaagggc
aagaagccggcggaaggcaagccagtcctcctcggcatcaccaaggcgtcgctgcagacc
cgcagcttcatctcggccgcctcgttccaggaaaccacccgcgtgctcaccgaggcttcg
gtgcagggcaaggtggatacgctgaacggcctcaaggagaatgtcatcgtcggccgcctc
atcccggcgggtaccggcgccggcatgaaccgcctgcgcgttgcggccaccagccgcgac
acggcgcttcgtgcggcccagcgccgcatggccgaagcgctggtcgctccggactcggcg
gaggagctccgcgccgcggaactcgcccgctcggcccgcgacgatgcgggcacgggtgac
gatcccttgggcgcagtggcaccctcgggtcacggcaccgatgccgatgccggtgattac
cttcaggaatcggaagcctaa
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integrated database retrieval system
