Sphingomonas piscis: G7077_13230
Help
Entry
G7077_13230 CDS
T07460
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spii
Sphingomonas piscis
Pathway
spii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7077_13230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spii03019
]
G7077_13230
Enzymes [BR:
spii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G7077_13230
Messenger RNA biogenesis [BR:
spii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G7077_13230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
DUF2529
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QIK79722
UniProt:
A0A6G7YSL3
LinkDB
All DBs
Position
2599154..2600443
Genome browser
AA seq
429 aa
AA seq
DB search
MSFQYLGLSQPVLRALASKNYTEATPIQLQAIPIVLGGHDLLGIAQTGTGKTAAFMLPSI
DALVEKRRVPRPATCRMLVLAPTRELASQIAESARAYSRFSNLSATTAFGGVPIGKQRKA
LERGVDILVATPGRLLDLVDQRFLSLREVEILVLDEADQMLDLGFIHALNSIAKMVPAQR
QTLFFSATMPPAIRKIAERFLTKPQEVKVAPEATTAERVDQYVSFLQNGEKQALLTMMLR
TGFSERGNMDRVLIFTRTKRGADKVVRALGANGIQAVAIHGNKSQPQREAALAAFRACEI
RVLVATDIAARGIDIPGVSHVINFELPNVPEQYVHRIGRTARAGADGIAIAYCAEDERPY
LKDIEKLTRQKIAIAPLPDNFVSEASRVVSAPAPAKNPPRHGQRQNLSRQPTARPNGSRR
PSRQRRRSA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttcaatacctcgggctttctcagcccgttcttcgtgcgcttgcgtccaagaat
tacacggaagccacgccaatccagctgcaggcgatcccgatcgtcctaggtggtcacgac
ctgctgggcatcgcccagaccggcaccggcaagactgcggcattcatgctgccgtcgatc
gatgcgctggtcgagaagcgccgcgttccgcggccggcgacctgccggatgctggtgctt
gcgccgacccgcgagcttgcgtcacagatcgcggagagtgcgcgagcttacagccgcttt
tccaacttgtcggcgacgaccgcgtttggcggcgttccaattggcaagcagcgcaaggcg
ctggagcgtggcgtcgacattctcgtcgcgacgccggggcgcttgctcgatctggtcgat
cagcgcttcctgtcgctgcgcgaggtggaaatcctagtcctagacgaggccgaccagatg
ctggacctgggcttcatccacgcactgaacagcattgccaagatggtgccggcgcagcgc
cagactttgttcttctcggccaccatgccgccggccatccgcaagatcgccgagcggttc
ctgaccaagccgcaagaggtcaaggtcgctccggaagccacaaccgcggagcgcgtcgat
caatatgtcagcttcttgcagaacggtgagaagcaggcgcttttgacgatgatgctccgc
acgggcttttccgagcgtggcaacatggatcgcgtgctgattttcacccgaaccaagcgt
ggcgccgacaaggtggttcgggcacttggcgccaacgggatccaggcggtcgccattcac
ggcaacaagagccagccccagcgcgaagcggcgttggccgccttccgcgcctgcgaaatc
cgcgtgctcgtcgccactgatatcgccgcccgcgggatcgacattccgggcgtcagccat
gtcatcaacttcgagctgccaaacgtgccggagcaatatgtccaccgcatcggccgcacg
gcgcgcgcgggtgccgacggcatcgcgatcgcgtactgcgccgaggacgagcgtccgtac
ctcaaggacatcgaaaagctgaccaggcagaagatcgcgatcgcgccgcttccggataat
ttcgtgtcggaggcgtcccgggtcgtgtccgctcctgccccagccaagaacccgccgcgg
cacggtcagcgccagaacctgtcgcgccaacccaccgcgcgtccaaacgggagccggcgt
ccaagcaggcagcgtcgccgttcggcctag
DBGET
integrated database retrieval system