KEGG   Sphingomonas piscis: G7077_13230
Entry
G7077_13230       CDS       T07460                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
spii  Sphingomonas piscis
Pathway
spii03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spii00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    G7077_13230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spii03019]
    G7077_13230
Enzymes [BR:spii01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     G7077_13230
Messenger RNA biogenesis [BR:spii03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     G7077_13230
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA DUF2529 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: QIK79722
UniProt: A0A6G7YSL3
LinkDB
Position
2599154..2600443
AA seq 429 aa
MSFQYLGLSQPVLRALASKNYTEATPIQLQAIPIVLGGHDLLGIAQTGTGKTAAFMLPSI
DALVEKRRVPRPATCRMLVLAPTRELASQIAESARAYSRFSNLSATTAFGGVPIGKQRKA
LERGVDILVATPGRLLDLVDQRFLSLREVEILVLDEADQMLDLGFIHALNSIAKMVPAQR
QTLFFSATMPPAIRKIAERFLTKPQEVKVAPEATTAERVDQYVSFLQNGEKQALLTMMLR
TGFSERGNMDRVLIFTRTKRGADKVVRALGANGIQAVAIHGNKSQPQREAALAAFRACEI
RVLVATDIAARGIDIPGVSHVINFELPNVPEQYVHRIGRTARAGADGIAIAYCAEDERPY
LKDIEKLTRQKIAIAPLPDNFVSEASRVVSAPAPAKNPPRHGQRQNLSRQPTARPNGSRR
PSRQRRRSA
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgtcatttcaatacctcgggctttctcagcccgttcttcgtgcgcttgcgtccaagaat
tacacggaagccacgccaatccagctgcaggcgatcccgatcgtcctaggtggtcacgac
ctgctgggcatcgcccagaccggcaccggcaagactgcggcattcatgctgccgtcgatc
gatgcgctggtcgagaagcgccgcgttccgcggccggcgacctgccggatgctggtgctt
gcgccgacccgcgagcttgcgtcacagatcgcggagagtgcgcgagcttacagccgcttt
tccaacttgtcggcgacgaccgcgtttggcggcgttccaattggcaagcagcgcaaggcg
ctggagcgtggcgtcgacattctcgtcgcgacgccggggcgcttgctcgatctggtcgat
cagcgcttcctgtcgctgcgcgaggtggaaatcctagtcctagacgaggccgaccagatg
ctggacctgggcttcatccacgcactgaacagcattgccaagatggtgccggcgcagcgc
cagactttgttcttctcggccaccatgccgccggccatccgcaagatcgccgagcggttc
ctgaccaagccgcaagaggtcaaggtcgctccggaagccacaaccgcggagcgcgtcgat
caatatgtcagcttcttgcagaacggtgagaagcaggcgcttttgacgatgatgctccgc
acgggcttttccgagcgtggcaacatggatcgcgtgctgattttcacccgaaccaagcgt
ggcgccgacaaggtggttcgggcacttggcgccaacgggatccaggcggtcgccattcac
ggcaacaagagccagccccagcgcgaagcggcgttggccgccttccgcgcctgcgaaatc
cgcgtgctcgtcgccactgatatcgccgcccgcgggatcgacattccgggcgtcagccat
gtcatcaacttcgagctgccaaacgtgccggagcaatatgtccaccgcatcggccgcacg
gcgcgcgcgggtgccgacggcatcgcgatcgcgtactgcgccgaggacgagcgtccgtac
ctcaaggacatcgaaaagctgaccaggcagaagatcgcgatcgcgccgcttccggataat
ttcgtgtcggaggcgtcccgggtcgtgtccgctcctgccccagccaagaacccgccgcgg
cacggtcagcgccagaacctgtcgcgccaacccaccgcgcgtccaaacgggagccggcgt
ccaagcaggcagcgtcgccgttcggcctag

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