Spirosoma sp. KCTC 42546: EXU85_18570
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Entry
EXU85_18570 CDS
T06164
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spik
Spirosoma sp. KCTC 42546
Pathway
spik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXU85_18570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spik03019
]
EXU85_18570
Enzymes [BR:
spik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXU85_18570
Messenger RNA biogenesis [BR:
spik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXU85_18570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QDK80498
LinkDB
All DBs
Position
4532009..4533493
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AA seq
494 aa
AA seq
DB search
MQFSDLSLIDPILKALAEEGYTTPTPIQEQAIPILLSRRDLLGCAQTGTGKTAAFAIPIL
QLLNEERSKTPNGPRRIKTLVMTPTRELAIQIAESFAAYGRHLNLRHTVIFGGVSQHAQV
NSLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPE
RRQSLFFSATMPPDVAKLADTILRNPAKVEVTPVSSTADTIAQAMYFVGREDKRKLLVHI
LNDQKIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL
VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEFLRD
IHKLIGKRVPVIEDHPYVLDISTAAVSPAPAQRQGQNRNGNRQGGGGRSTGSSNQGSYRR
EGGNNSRQADSSAGGGQPRTNQSRPAPANQERSTPFRRDGGNSNQSRPSGTNAERPSRGT
GNSRFSNTSSDKNY
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctgatttatccttaatagaccctatcctcaaagcgcttgctgaagaagga
tacaccacaccaactcccatccaggaacaagccataccaattttattgagccgccgggat
ttattgggttgcgcccagaccggcactggaaaaacagccgcttttgctattccaattctg
caattgctgaacgaagaacgcagcaaaacacccaatggtccacggcggattaaaacgctg
gtgatgacccccacccgtgaattagcgatccagattgccgaaagctttgccgcctatggc
cgtcacctgaatttacgacatacggtaatttttggcggtgtttcgcaacatgcacaggta
aattccctcaaggcgggtgtcgatgtactgattgctacacccggtcgtttgctcgatctg
atgaatcagggcttcatatcgctccgtgatgtgcagttttttgtactcgatgaagccgac
cggatgcttgacatgggcttcatccacgacgttaagaaagtcataacgaagttacccgaa
cgtcggcaatcgctgtttttctcagcaaccatgccgcccgacgtagctaaactagccgat
actattttacggaatcctgccaaggttgaagtaacacctgtatcctctacagccgatacc
attgcgcaggccatgtattttgtgggacgtgaagacaaacgtaaactgctggtacacatc
ctgaacgaccaaaaaatcaaatctgctcttgtctttgcccgtaccaagcacggtgccgat
aaggttgtgaaagatttattgaaagcgggtattggtgccgaagccattcacggcaacaaa
tcgcagaatgcacgccagcgggcgctctcgaatttcaagagccgtgaaacacgggtgctt
gtcgcaacagatattgcagcacggggtatcgatgttgatgaactatcgcacgtaattaat
tacgaactaccaaacattcctgaaacctacgttcaccgcattggtcggacgggacgggct
ggtcatgatggcattgccctatcattctgtgatgcggaagaaactgagttcctgcgcgac
attcataaattgattggcaagcgcgttccggtcattgaagatcatccgtatgtgcttgac
atttctacagctgccgtttcaccggctccggcacaacgccagggccagaatcggaatgga
aatcggcaaggtggcggtggccgctcaacaggatcatccaatcagggatcgtatcggcgc
gagggtggcaacaacagccgccaggccgattcatctgctggcggaggtcagccccggact
aaccaaagtcggcctgctcctgctaatcaggagcggagcacaccattccggcgtgatggc
gggaactccaatcaaagtcggcctagtggtaccaacgcggaacgcccaagtcggggcacc
ggcaatagtcggtttagtaatacaagttccgacaaaaattattag
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