Spirosoma sp. KCTC 42546: EXU85_21585
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Entry
EXU85_21585 CDS
T06164
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spik
Spirosoma sp. KCTC 42546
Brite
KEGG Orthology (KO) [BR:
spik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spik03016
]
EXU85_21585
Enzymes [BR:
spik01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EXU85_21585
Transfer RNA biogenesis [BR:
spik03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EXU85_21585
Prokaryotic type
tRNA splicing ligases
EXU85_21585
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDK81061
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Position
5252658..5254184
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AA seq
508 aa
AA seq
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METPISLDDLLTLGPIPDQLQGTFLRVANGLVQRAGYPKEKVMGLLAQMLQNPKKYAYSK
NKVTNLAQSIYALNKQGIAVPLSETGVTYLPPDPAPYVVTAQGEQAEQTFDLRTGPLPYA
VFGREQIEEGALKQMETAASLPISVAGALMPDAHQGYGLPIGGVLATEANTVIPFAVGVD
IACRMCLSVFDLPPAFLKREPHLLKKSLVEQTKFGIGGETREKIDESVMDLPEWQATKVI
RDLKDKAYRQLGSSGTGNHFVEWGIVEVYAHDDLLNLPPGEYLALLSHSGSRGFGGNVAN
YYSKLAMQKTKLPKQAAHLAWLDLATEEGQAYWIAMNLAGEYASANHHEIHRKLAKALRE
KPLVMVENHHNFAWKEKLADGQEVIVHRKGATPAGSDVLGIIPGSMTQPGFVVRGKGNAE
SLNSASHGAGRLMSRTQAFNTLTRSQWNKALTEADIQLIGGDLDEAPMVYKNIETVINAQ
SDLVSVLAKFTPKIVRMADANRKEGRED
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaccaatttcactagacgatctattaacattggggccaatccccgatcagttg
cagggaacgtttcttcgcgtggcaaatggcctggtacaacgggccggataccctaaagaa
aaagtaatgggtttgctggcgcagatgctccagaatcctaaaaagtacgcttactctaaa
aacaaggtcactaatctggcccagtcgatctatgcgttgaacaaacaaggtatagccgtt
ccactgagcgagacaggcgtaacgtacctgcctcctgacccagcaccgtatgtggtaacc
gctcagggagaacaagctgaacaaaccttcgacctgcgtacgggaccactcccctatgct
gtatttgggcgtgagcagattgaagaaggtgcgttaaaacaaatggaaacagccgctagc
ctacccatttcggtagcgggtgcgctcatgcccgatgcccaccaagggtatgggcttcct
attggtggcgtactggctacagaagcgaacacggtcattccgtttgcggttggggtcgat
attgcctgccgaatgtgcctgtcggttttcgatttaccgcccgcctttttgaaacgcgaa
ccgcatttattgaagaagtcgctggtggagcaaaccaaattcggaattgggggcgaaacc
cgcgagaaaatcgacgagagcgttatggatttacccgaatggcaggccaccaaagtgatc
cgcgatttaaaagacaaagcgtatcggcagttgggaagctcgggcacaggcaaccatttt
gtggagtggggcatcgtggaggtatatgctcatgacgatctcctgaatctgccaccgggc
gaatacctggccctgttatcgcactcaggatcgcgcggatttgggggtaatgtggcaaat
tattactcaaaactggccatgcagaaaaccaaactacccaaacaggctgcccatttagcc
tggctggatttggctacggaagaaggacaggcctactggattgccatgaatctagcgggc
gagtatgcctctgccaaccatcatgaaatccatagaaaactggcaaaagccctacgtgaa
aagccattggtgatggttgaaaaccaccacaactttgcgtggaaggagaaactggccgat
ggccaggaggtgattgttcaccgaaaaggagccacacccgccggatctgacgtgctggga
attattccgggatcgatgacacaaccgggctttgtggtgcggggaaaaggcaatgcagaa
tcgttgaattcagcctcgcacggagctggccgactgatgtcgcgaacccaggcgtttaat
acgctcacccgctcccaatggaacaaagccttaacagaagccgatattcaacttattggc
ggggacctggatgaggccccaatggtttacaaaaacattgagaccgtcatcaatgcgcaa
agcgacctggtttcggtgctggcaaagttcacgcccaaaattgttcggatggccgatgcc
aaccggaaggaaggacgtgaagattaa
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