Spirosoma sp. KCTC 42546: EXU85_23370
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Entry
EXU85_23370 CDS
T06164
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spik
Spirosoma sp. KCTC 42546
Pathway
spik03030
DNA replication
spik03430
Mismatch repair
spik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EXU85_23370 (dnaE)
03430 Mismatch repair
EXU85_23370 (dnaE)
03440 Homologous recombination
EXU85_23370 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spik03032
]
EXU85_23370 (dnaE)
03400 DNA repair and recombination proteins [BR:
spik03400
]
EXU85_23370 (dnaE)
Enzymes [BR:
spik01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EXU85_23370 (dnaE)
DNA replication proteins [BR:
spik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EXU85_23370 (dnaE)
DNA repair and recombination proteins [BR:
spik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EXU85_23370 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
T2SSK
RE_MjaI
DUF6282
Motif
Other DBs
NCBI-ProteinID:
QDK81388
LinkDB
All DBs
Position
5667824..5671459
Genome browser
AA seq
1211 aa
AA seq
DB search
MQFSHLHCHTQYSLLDGQADIKKLIKKAKADNMPAVAITDHGNMFGVFEFVAEASKQGIK
PIVGCEFYVVEDHTKKQFTKEQKDIRYHQLLLAKNAQGYKNLAKLCSLGYMEGLYGKYPR
VTKELIDKYKEGLIASTCCIGASVPKTILKKGEEAGEIEFKWWLDRFGEDYYVELQRHEI
PDQIKANEVLIKFARKYNVKIIASNDSHYVDQDDWVAHDILLCVNTNEKQSTPSMKDFSD
DDVMPKNTRFAFFSDQFYFKNTQEMTTLFHDLPEAIDNTNEIVGKVETLKLKRDIMLPNF
PIPQEFQQHTDDVLNQWEYLRHLTYTGAKERYVDILPHIQERLDFELFTIKTMGFAGYFL
IVADFIKAGRDLGVMIGPGRGSAAGSAVAYCTGITNIDPIKYDLLFERFLNPDRKSMPDI
DTDFDDEGRQKVIDYVVQKYGKSQVAQIVTYGTMASKSSIKDVARVMDLPLQDANAVVKL
VPDKPTYNMTLKRIFEDPLDGPGGLASVIQPEELDNVKRMRALESGDRSAAQAMRIVDYE
KVSAVLKQARKLEGTVRNTGLHAAGIIIAPSDLSDIVPVSTSKDTNLIITQYEGKVIEDA
GVIKMDFLGLRNLTIIKECLRLIRQNHGGFLIDGKETDIDDIPLDDEETYKLFQRGETNA
VFQFESDGMKKHMKDLKPDRFGDLIAMNALYRPGPIAYIPNYINRKHGREEVKYDMPEME
EYLADTYGITVYQEQLMLLSQKLGNFTKGDADVLRKAMGKKDKATLDKMKGKFMDGCASN
NLPLKVCEKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYRSEYMAAVLTSCLGTI
DKITFFMEECKNINIPVLGPDVNESERFFGVNQKGEIRFGLGGIKGAGDAAVEAIIEERK
AGGPFKDIFDFAIRVNLRTVNKKTWESLAYAGAFDSIDEYHRAQYFEMAEGDTSPFLDKI
IRYANNYHAEKAAAQQSLFGGMMNGEPMIARPKAPTVTEWNQIEKLKFEKDVVGFYITGH
PLDEFKLEMDGFCNCTLANIFETKQPEIKVGGIVSAVQMRVTKSGNPFCIFKIEDYNSSL
EMALFGDDYVRLVQYIEVGRFLHITGKTQNKWGSEQLEFKPVSIRLLNDMREKFCKELRV
SLTIDIVNAQLIAKLNELATAHPGTCALSFNVVDPIERIEISLQARTLKVSPANSFLKAL
EAMDGVTCKVA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgcaattctcacacctccactgccacacacaatactcgctgctcgatggtcaggccgat
attaagaagctgattaagaaggctaaagccgataatatgcccgccgttgccattacggat
cacggcaatatgttcggcgtgtttgaattcgtggccgaagccagcaagcaaggcatcaaa
cccattgttggttgcgagttctatgtagtggaagatcataccaagaaacaattcaccaag
gagcaaaaggacattcggtatcaccagcttttattagccaagaatgcacagggctacaaa
aacctggcgaaactgtgctcactgggctacatggagggattatacggcaagtacccccgt
gttactaaagaactcattgataaatataaagagggcctgatagcctctacctgctgcatt
ggcgcatcggttccaaaaaccattctcaaaaaaggcgaagaagcgggtgaaattgaattc
aagtggtggctcgaccgcttcggcgaggattactacgttgagctacagcgccatgaaatt
cccgatcagatcaaagccaatgaggttttaatcaagtttgcccgaaaatataacgtcaag
atcattgcgtccaacgattcgcactatgtcgatcaggacgactgggtagcgcacgatatc
ctgctgtgcgtgaacaccaacgaaaagcaaagtacgccgtcgatgaaggactttagcgac
gacgatgtgatgccgaaaaacacccgctttgccttcttcagcgaccagttctatttcaag
aacacgcaggagatgacgacgctgttccacgaccttcctgaagccatcgacaataccaat
gagattgtgggcaaggtcgagaccctaaagctgaagcgcgatatcatgctgccgaacttc
cccattcctcaggaattccagcagcataccgatgacgttctgaatcagtgggaatacctg
cgtcacctcacgtatacgggggccaaagaacgttacgtagatattctgccgcacattcag
gagcgccttgattttgaactgtttaccatcaaaacgatgggttttgccgggtacttcctg
atcgtggccgacttcattaaagctgggcgcgatctgggtgtgatgatcggccccggccgt
ggatcggcagcgggtagtgcagtggcctattgtacgggcatcaccaatattgatcccatt
aagtacgaccttctgttcgagcggttcctgaaccccgaccggaagtcgatgcccgatatc
gatacggacttcgacgatgaaggccgtcagaaggtgatcgattatgtggtgcagaagtac
gggaaatcgcaggtagcgcagatcgtgacctacggtacgatggcctccaaatcgtcgatc
aaagatgtagcgcgggtgatggatttaccccttcaggatgccaacgctgttgtgaaactc
gtgcccgacaagccgacgtacaatatgacgctcaagcgtatcttcgaagatccactcgac
gggccaggcggtttagcgagcgttatccagcccgaagaactggataatgtgaagcgaatg
cgggcgcttgaatcgggcgatcggagtgccgcgcaggccatgcgaattgtcgattacgaa
aaggtatcggccgttcttaaacaagcgcgtaaactggaaggtacggttcgtaatacaggt
ttgcacgcagcgggaattatcattgctcccagcgatttgtcggacattgttccggtatcg
acctcaaaagatacgaacctgattatcacccagtatgaagggaaagtcattgaggatgcg
ggtgtaatcaaaatggactttttggggttgcgcaacctgaccatcatcaaggaatgtttg
cggctcatccggcagaatcacggcgggtttttaattgatggcaaggaaactgacattgat
gatattccactagacgacgaggaaacctataaactctttcaacggggcgaaaccaatgcc
gtgttccagtttgaatcggacggcatgaaaaagcacatgaaagatctgaagcctgaccgc
tttggtgacctcattgccatgaacgccctctatcgtccgggcccaattgcctacatccca
aactacatcaaccggaaacacggccgcgaagaggttaagtacgacatgccagaaatggaa
gagtacttggctgatacctacggcattacggtgtaccaggagcagttgatgctgctgtcg
caaaagctgggtaacttcaccaaaggcgacgccgacgtattgcggaaggcgatgggtaag
aaggacaaagccacgctggataaaatgaagggcaaatttatggatggttgtgcctctaat
aatttgcccctgaaagtctgcgagaaagtctggaccgactgggaagcgtttgcttcctac
gcgtttaacaaatcgcactccacctgctatgcgttcgtagcttaccaaacagcttacctc
aaagcccattatcgctctgagtatatggcggccgttttaaccagctgcctcggtacaatt
gataagattacgttcttcatggaagaatgtaagaatataaatattccggtattaggcccg
gatgtaaacgaatcggaacgctttttcggcgttaaccaaaaaggtgaaatccgctttggt
ctgggtggtatcaaaggtgcgggcgatgcggccgtggaagctatcattgaagaacgcaaa
gcaggcggccctttcaaagacatatttgattttgccattcgggtcaacctccggacggtg
aacaagaaaacctgggaatcgctggcctatgctggtgcgttcgacagcatcgacgaatac
catcgggcgcagtattttgagatggccgagggcgatacatcgccgtttctggataagatt
atccgctacgccaacaactaccacgccgagaaagcagccgcccaacagtcattgtttggg
ggcatgatgaatggggaacccatgattgcccgccccaaagcgccaaccgtgacagagtgg
aaccagatcgaaaaactgaaattcgagaaagatgtggttggtttttacattaccggccac
ccgctcgatgaattcaaactcgaaatggacggattttgtaactgcacactggccaatatc
ttcgagacaaaacaacccgaaattaaggttggaggcatcgtatctgccgttcaaatgcgg
gtaacaaagagtggaaatccgttctgcatcttcaaaatcgaagattacaatagctcattg
gaaatggccctttttggggatgactatgtccggctggtgcaatatattgaggtgggtcgt
ttcctacatatcaccggaaaaacccagaacaaatggggctctgagcaactggagttcaaa
ccagtaagtattcgactactgaacgatatgcgcgaaaaattctgcaaagaattacgcgta
tccttaaccatcgatatagtaaatgcccaacttattgccaaactaaacgagctggcaact
gcacatccaggcacctgtgcgctttcgttcaacgtcgtcgatcccatcgagcgtattgag
ataagtttgcaggcccgaacgttaaaagtatcgcccgcgaactcatttttgaaagcactg
gaagcgatggacggcgtgacgtgtaaggtggcgtaa
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