Spirosoma sp. KCTC 42546: EXU85_28380
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Entry
EXU85_28380 CDS
T06164
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spik
Spirosoma sp. KCTC 42546
Pathway
spik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXU85_28380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spik03019
]
EXU85_28380
03009 Ribosome biogenesis [BR:
spik03009
]
EXU85_28380
Enzymes [BR:
spik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXU85_28380
Messenger RNA biogenesis [BR:
spik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXU85_28380
Ribosome biogenesis [BR:
spik03009
]
Prokaryotic type
rRNA helicases
EXU85_28380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Cas3-like_C_2
AAA_19
Card1_endonuc
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDK82313
LinkDB
All DBs
Position
6952980..6955130
Genome browser
AA seq
716 aa
AA seq
DB search
MKTKTTKAVDQNDLLDIEKVAAEMAASAVSPVTEVKTAKVPKKKVAKPGIELTPEINAED
TAVETVVEGIADKVVIVADAPVTTEAEAITPVTTNAPVVEVAPKVDPNQILFSSLAISPE
LLQAVTDMGFISPSPIQAEAIPPILAGRDVIGQAQTGTGKTAAFGIPALELIDVQDRSVQ
TLILCPTRELALQVAEEIKKLAKHKRGVRIEAIYGGDSIERQIRSLKSGVHIVIGTPGRV
MDHMERNTLKLDNVKMMILDEADEMLDMGFREDIESILQDMPEERQTILFSATMSKPIMQ
ITQKFLQDPVLVKVVKKELTNINIEQVYFEVKPKAKVEVMCRLIDMYDLKLLLVFCNTKR
KVDEIVEDLQIRGYQAEGLHGDLRQSQRTNVMSKFRAGTTSILVATDVAARGIDVDDVDA
VINFDIPLDEEYYVHRIGRTGRAGKSGRAFSMVGRDEKYRFREIQSYTKVRVEKGVIPSF
EDIVGVRKARFIEQLQETIKESKDLNLYDDLLTQLHHTGFSTEQIVAALVKRSMGLEKNE
FADQNLGLEDDRRREERGRGNDRYADRGRGEGGGRFEDRRGGGNRFGERDDRGARFGRND
GPERPRFADRDRNERSGRDGERKPYFDRDDKRVPREREANMTRLMVSIGRKDFVRPGDIV
GAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANRVVDVMEGNTIKGRRVNIEIAR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgaaaacaaccaaagccgttgatcaaaacgatcttctggatattgaaaaagta
gcagccgaaatggccgctagcgcagtttctcccgttactgaagttaaaacggcgaaagtc
cctaaaaagaaagttgctaaaccaggcatcgaacttacaccagaaatcaatgcggaagat
actgccgttgagaccgttgttgaaggcattgccgataaagtagttatcgttgcggatgcg
cctgttacaacggaagctgaagcaataacacccgttaccactaacgctcccgtagtggaa
gtggctcctaaagttgatccaaatcaaattttattctctagtttagctatttcgcccgaa
ctattacaagccgtaaccgacatgggctttatcagcccatcgccgattcaggccgaagcg
attccacccattctggctggtcgcgatgtgattggacaggcgcaaaccggaacaggcaaa
acagctgcgtttggtattcctgcacttgaactgattgatgttcaggatcgctcggtacaa
acgctgatcctctgccctacccgcgaattagcgttacaggtagccgaagaaattaagaaa
ctggccaaacacaagcggggcgttcgtatcgaagcgatctacggtggtgattccatcgaa
cggcagattcggtcgctcaaaagcggtgttcatatcgtaattggtacgccaggtcgtgtt
atggatcacatggagcgtaacaccctcaaactcgacaacgttaagatgatgattcttgac
gaagccgatgagatgctggacatgggcttccgtgaagatattgaaagcattttacaggac
atgcccgaagaacggcagacgatcctgttctcggccacgatgtcgaaaccaattatgcag
atcacgcaaaaattcctgcaggatcctgtgctggtgaaagtggttaagaaagaattgacc
aacatcaacattgagcaggtctattttgaagtgaaaccaaaagcgaaagttgaggtaatg
tgccgtctgatcgacatgtacgacctgaaactgctgctggtattctgtaacaccaaacgt
aaggttgacgaaatcgtagaagatctgcaaatccgtggttatcaggcagaaggcttgcat
ggtgatctgcgccagtcgcaacggaccaacgtaatgagcaagttccgggccggtacaacc
agtattctggtagctaccgacgtagccgctcggggtatcgacgttgacgatgtagatgcc
gttattaacttcgacattccgctcgacgaagaatattatgtacaccgcattggccggacg
ggccgcgctggcaaatcgggccgggcgttctcgatggtgggtcgcgatgagaaatatcgt
ttccgcgaaattcagtcgtacacgaaagtacgggttgaaaaaggtgtaatcccatccttt
gaagatatcgttggtgtgcgtaaggctcgtttcatcgagcaattgcaagagacgattaag
gaaagcaaagacctgaatctgtacgacgatttactgacgcaactgcatcataccggcttc
tcgaccgaacagatcgtagcagccctggtgaaacgcagcatgggtctggagaaaaacgaa
ttcgctgatcaaaatctaggccttgaagatgatcgccgtcgtgaagaacgaggtcgtgga
aatgaccgttacgctgatcgtggacgcggtgaaggcggtggccgtttcgaggaccgtcgg
ggtggtggcaatcgctttggcgaacgcgacgaccggggggcacgttttggccgtaatgac
ggaccagagcgcccacgttttgccgatcgggatcgtaatgagcgttcaggccgtgatggt
gagcgcaagccttatttcgatcgggacgacaaacgggttccccgcgagcgtgaagccaat
atgacccgcctgatggtgagcattggccgcaaggacttcgttcgtccgggcgatattgta
ggtgccattgccggtgaagccaatattccaggcaacagcatcggaagcatcgacatcttc
gacaaattcacgtatgtggacgtaccgaaagatgttgccaaccgcgttgttgacgtaatg
gaagggaacacgattaaaggtcgccgggtaaatattgaaattgcacggtaa
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