Spirosoma sp. KCTC 42546: EXU85_34285
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Entry
EXU85_34285 CDS
T06164
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spik
Spirosoma sp. KCTC 42546
Pathway
spik03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EXU85_34285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spik03400
]
EXU85_34285
Enzymes [BR:
spik01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
EXU85_34285
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
EXU85_34285
DNA repair and recombination proteins [BR:
spik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EXU85_34285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_NUD
Zn_ribbon_6
Zn_ribbon_Nudix
COMM_HN
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
QDK83404
UniProt:
A0A515A9C9
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All DBs
Position
8434128..8434946
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AA seq
272 aa
AA seq
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MPELPEVEIRRHYLETSSLHQPIAHIDVEDKKLLTTDYSTLLTTLVGRQFTGTRRVGKNL
FVFTDTSDVIVHMHFGMTGDLEYYHSSIDRPRFARIVFEFNNGFNLGFLCPRKFERVGLV
DDIDAFLRRKKIGPDGLTISLEELNERVHRKKALIKPVLLDQSIVAGLGNWIVDEVLFQA
CIHPEQRADTLTNRQMSQLHAAIHLVLKTAIRYEATYRDFPNNFLIHVREWDDSPYDDVE
AHKFCPRCGTRIERSVVGGRTTFFCPKEQLIW
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacttcctgaggtcgaaattagacgacactatctcgaaacttcatctcttcac
cagccaatcgctcacattgacgttgaggataagaagctactcacaactgattatagtacg
ctattaactacactggttggtcggcaatttaccggtacacgtcgggttgggaagaacctg
ttcgtgtttactgatacctctgatgttatcgttcatatgcactttggtatgaccggtgat
ttagaatactaccattcatcgattgatcggcctcggtttgcccgaatcgtatttgagttc
aacaacgggtttaatcttggctttttgtgcccacgcaagtttgagcgagttggcttggtc
gatgatatagacgccttcttacgccgaaaaaaaattggtccagacgggcttactatttcc
ctggaggaattaaatgaacgtgtacaccggaagaaagctcttataaagcccgtcctcctt
gatcagagcattgtagccggtcttggtaactggattgtagatgaagttttattccaggct
tgcattcatcccgagcaacgagccgatacgcttacgaatagacagatgagtcaacttcat
gcagcaattcaccttgtgctcaaaacggcaattcgctatgaagctacgtaccgggatttt
ccaaacaattttctaatccatgtgcgagagtgggatgattctccttacgatgatgtcgaa
gctcataaattctgccctcgctgtggcacccgcatcgaacgttcggtagtgggtggacgt
accaccttcttctgccccaaggaacaactaatttggtga
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