Spirosoma sp. KCTC 42546: EXU85_34760
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Entry
EXU85_34760 CDS
T06164
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spik
Spirosoma sp. KCTC 42546
Pathway
spik03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EXU85_34760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spik03400
]
EXU85_34760 (mfd)
Enzymes [BR:
spik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EXU85_34760 (mfd)
DNA repair and recombination proteins [BR:
spik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EXU85_34760 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDK83485
UniProt:
A0A515A9G7
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All DBs
Position
complement(8547067..8550423)
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AA seq
1118 aa
AA seq
DB search
MKPDELLGLYAEDSFIKLLTEPFSRKVSTSDPQRLQIKGLAGSLDAVLASSIFKSVGGNH
LYILTDRDEAAYFFNDLQNLLSQEVLLFPMSFKKPYQYEEVENANILMRAEVLNKLNPAP
KDGLLMVTYPEALSEKVINKRSLQANTLTIRVGEKLDTHFVAELLQTYEFEKTDFVYEAG
QFSVRGGIIDVFSFASEFPFRIDLFDDEVESIRKFNPETQLSTDSVAFINIIPNIQTKLV
EETREPFFSFLPEATTIWAKDIEFTLEIIEKCYEKAEQSFESVVAGSGGIQVVSDPGSLF
ETRRSFLNELKRYRTVEFGRKFYFKTEGKQQYNSKPQPSFNKDFKRLVDTLGDNQSKGFT
NIISAESFKQLDRLRTIFEELDPFVKFQPINIGLREGFVDEALKIACYTDHQIFDRYYKY
RVQDKFSKSKALTLRELKTLQPGDYVTHIDYGIGRFAGLEKVDHAGNEQEAIRLIYRDND
ILLVSIHSLHKIAKYSGREGGPPTMSKLGSQEWEQKKSRIRKQVKDIARELIALYAKRRT
APGYAYSRDSFLQVELESSFIYEDTPDQAKATNDVKDDMERPHPMDRLVCGDVGFGKTEI
AIRAAFKAVTDNKQVAVLVPTTILAMQHFKTFSERMADFPVKIEYINRFRSAAQTKEILK
GVASGEIGILIGTHRIVNKDIKFKDLGLLVIDEEQKFGVKTKDRLKEMRVEVDVLTLTAT
PIPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHPYNEATIRDAVSYEIRRGGQVFFVHN
RVNDIESIGNLIMRLVPEARVGVAHGQMEGDRLERIMTRFIEGDYDVLISTNIIESGLDI
PNANTILINNAHYFGLSDLHQMRGRVGRSNRKAFCYLLTPPPSVMTADARKRLQTLEDFS
DLGEGFKIAMRDLDIRGAGNLLGAEQSGFVNDLGFEMYHKVLDEAVQELRENEFKELFET
KPGDLKLTLPDTVIETDLQVVIPERYVSNISERLALYTRLDSLQNNEELQAFRQEVLDRF
GPMPEEVENLIKMVNVRWKAEQLYLEKLTLKNNILKGYFVSNGNDDFFKSDQFGKVIEYL
KRNPTKCSLKESKGRPIITHVNVYSVEQLDEILGALTN
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccagatgaattgctcggcctatatgccgaagatagttttataaaattactgact
gagcctttcagtcggaaagtatctacaagcgatcctcaacgactacagattaaaggttta
gctgggagtcttgatgctgtgttggcttcttccatatttaaatcggtcggtggaaatcac
ctttatattctgaccgaccgcgatgaggcagcttacttcttcaatgacttgcaaaatctg
cttagccaggaagtattactatttccaatgtcctttaaaaagccctatcaatatgaagaa
gtagaaaatgcaaacatattgatgcgggcagaggtgctgaataaacttaacccagctcca
aaagatggtttattaatggtaacctaccccgaagcattatcggagaaggtcattaataaa
cgatccttacaggccaatacactgaccatacgggtaggagagaagttagatacccatttc
gtagcagaactacttcaaacctatgaatttgagaaaacagatttcgtttacgaagctggt
cagttttctgttcgagggggaatcatcgacgttttctcatttgccagtgagtttccattt
cggattgatttgtttgatgacgaagttgagagtattcgcaaattcaatcccgaaacccag
ttatcaacagactcggtagcgtttattaacattattccgaacattcagacaaaactcgtt
gaggaaacccgcgaaccatttttcagctttctacctgaagcaacaactatctgggcaaaa
gacattgagtttacactagaaatcatcgagaagtgttacgagaaagcagaacaaagcttc
gaatcagtggtcgctggcagtggaggaatccaagtggtttcagatcccggaagtttgttc
gaaacccgacgatcatttctgaatgaactaaagcggtatagaacagttgagttcggacgt
aagttttacttcaaaacagaaggcaaacagcagtataattcaaagcctcaaccgtcgttt
aacaaagatttcaaacggctggttgatacactaggggataatcaatcgaaaggatttacc
aacattatctcggctgaatcctttaagcaactggaccggcttcgaacaatttttgaggaa
cttgacccatttgtgaagtttcagccgataaatatcggtttacgggaaggcttcgtggat
gaagcattaaaaatagcctgttatactgatcaccagatttttgatcgctactataaatat
cgtgttcaggacaagttttcgaaatcgaaagcacttacactgcgtgaactaaaaacacta
cagcctggcgattatgttacgcacatagattacggtattggccggtttgcaggtttagaa
aaagtagaccatgcgggaaatgaacaagaagcaatcaggctcatttatcgcgataatgat
attctgttagttagtattcacagcttacataagattgctaaatacagtggtagggaaggc
gggccacccaccatgagcaagcttggttctcaggaatgggagcagaaaaaatcccggatt
cgcaagcaggtaaaggatattgcccgtgaattgattgcgctgtatgccaagcgtagaaca
gcaccaggatatgcgtacagtcgcgatagtttccttcaggtcgagctagagtcgtcattt
atttatgaggatacaccagatcaggccaaagcaaccaatgatgtaaaggatgatatggaa
aggcctcacccgatggaccggctggtgtgtggagatgtaggtttcggtaaaacggagatt
gctattcgggcggcctttaaggcagtgacggacaataagcaggttgccgtgctggtacca
acaacaatcctggccatgcagcatttcaagacgtttagcgagcgcatggccgatttccct
gtcaagattgaatacatcaaccgatttcggtctgcggctcaaacgaaagaaattctaaaa
ggtgtagcctcaggtgaaatcggtattttgatcggtactcaccgaatagttaataaagac
ataaaattcaaagatttaggacttcttgtgatagatgaggagcagaagtttggcgtaaaa
accaaagacagactcaaggaaatgcgtgtggaggtcgacgtattaacacttacagctacg
ccaattccccgaacactacatttctcactgatgggtgctcgtgacctctccgtaatcgca
acgcccccacccaatcggcaacccgtcacgacagaagttcatccctacaacgaagcaacg
attcgggatgcggtgagctatgaaatcagacgaggtggtcaggtatttttcgttcataac
cgagtgaatgatatcgaatctattggtaatctaatcatgcgacttgtaccagaggcccga
gttggtgtagcccatggacaaatggaaggggatagattagagcgaattatgactcgattt
atcgagggtgattatgatgtcttgatctctacaaatatcatcgaatcaggacttgatatt
ccaaatgcgaacacgattctaattaacaatgcccactatttcgggctttctgatcttcat
cagatgcggggtcgcgtgggtcgttcgaaccggaaagcattttgttatttattgacgccc
cccccttcagtcatgacggccgatgcccgcaaacgtctacaaacactagaggacttttct
gacttaggcgaaggttttaagatcgcgatgcgtgatcttgatattcgaggtgctggaaat
ttactaggtgcagaacagagtgggtttgttaatgaccttggctttgaaatgtaccataaa
gtgcttgacgaagcagtccaggaattacgcgaaaatgaatttaaagaactatttgagaca
aaacctggtgacctaaaactaacattacctgatactgttatcgagactgatttgcaggtt
gttatcccagaacgatacgtctcaaatatatcggaacgactagcgttatatacacgcctg
gatagtcttcagaataacgaagagctacaggcattcagacaggaagtgctcgatcgtttc
ggaccgatgcccgaagaagtcgaaaacctgataaaaatggtcaacgttcgctggaaagcc
gaacagttataccttgaaaaactgacgcttaagaataatatcctgaaaggatacttcgtt
tctaacgggaacgacgacttctttaaatccgatcaatttggcaaggtaattgagtacctc
aagcgaaacccaaccaaatgttcgttgaaagaatcgaagggacgaccaattatcacccat
gtcaatgtgtattccgttgagcaattggatgaaatattgggcgcattgacgaattaa
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