Sardina pilchardus (sardine): 134059365
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Entry
134059365 CDS
T10667
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03020
RNA polymerase
spil03420
Nucleotide excision repair
Brite
Enzymes [BR:
spil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134059365 (polr2a)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
134059365 (polr2a)
DNA repair and recombination proteins [BR:
spil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
134059365 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134059365
NCBI-ProteinID:
XP_062371667
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Position
16:complement(14739093..14755129)
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AA seq
1969 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMAECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCFFCSKLLVDSN
NPKIKDILGKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGMEQQDNDEDLSKEKGHG
GCGRYQPIIRRSGLELYAEWKHVNEDSQEKKILLTPERVHEIFKRISDEEDVILGMDPKF
ARPEWMILTVLPVPPLAVRPAVIMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVSRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKVPQPAILKPRPFWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVE
FQNLATLKPSHKAFEKKFRFDYSNERALRRTLQEDVVKDVLTNAHVQSALEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVIEGTHDLSKKLVI
VNGEDPLSRQAQANATLLFNIHLRSTLCSRRMTEEFRLSTEAFDWLLGEIETKFNQSITH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LVGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKRIII
TEDGEFKALQEWILETDGVALMRVLSDKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVPGPTGMF
YGSAPSPMSAMSPAMTPWNMGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEENN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagtccagatgagcttaaacgaatgtctgtcaccgaaggtggcatcaag
tactccgagactacggagggaggccgcccaaagctcggtggtcttatggatccaagacaa
ggggtcatagaacggacgggcaggtgtcagacatgtgcaggtaacatggcagagtgcccc
ggtcattttggccacattgagctggcgaagccggtgtttcatgttggcttcgtcaacaaa
attatgaaggttcttcgctgtgtctgtttcttctgctccaagcttctagtggattctaat
aacccgaagatcaaggacatcctggggaagtcaaaggggcagccacggaagcgcctgacc
cacgtctatgacctctgtaaaggcaaaaacatttgcgaaggtggtgaggagatggacaac
aagtttggaatggaacagcaggacaacgatgaggacctttccaaggagaagggtcatggc
ggctgcgggcgttaccagccgatcattcggcgctcgggcctggagctctacgccgagtgg
aagcacgtgaacgaggactcgcaggagaagaagatcctgctcaccccggagcgtgtgcac
gagatcttcaagcgcatctccgacgaggaggacgtcatcttgggcatggaccccaagttc
gcccggcccgagtggatgatcctcacggtgctgcccgtgccccctctcgctgtccgaccc
gctgtgatcatgcagggctcagcccgaaatcaggatgacttgactcacaagctggccgac
atagtcaagatcaacaaccagctgcggagaaacgagcagagtggtgcggcggctcacgtc
atcgctgaggacgtgaagctcctgcagttccacgtggccaccatggtggacaacgagctc
cctggtctgcccagagcgatgcagaaatcaggccgtccactcaagtccctcaaacagcgt
ctgaagggcaaggagggtcgcgtccgtggtaacctgatgggtaagcgtgtggacttctcg
gcccgaacagtcatcacgcccgaccccaacctacagattgaccaagtgggtgtgcctcgc
tctattgccgccaacatgaccttccctgagatcgtcacacccttcaacatcgacagactt
caagagcttgtgagcagagggaacagtcagtacccgggagccaaatacatcatccgtgac
aatggtgaccgcattgacctgcgattccaccccaaaccaagtgaccttcacctccagatt
ggatacaaggtcgaacgacacatgtgcgatggtgacatcatcatcttcaacagacagcct
acgctgcataaaatgtctatgatggggcatcgagtgcgaatccttccatggtccaccttc
cgtatgaacctcagtgtgacgaccccctacaacgccgactttgacggggacgagatgaac
ttgcatctcccccagtctttggagacgagagcggagatccaggagctggccatggtgcct
cgtatgatcgtcaccccccagtccaacaggcccgtcatgggtatcgtgcaggacacactt
accgccgtgcgcaaattcacaaagagagacgtcttcttagacaggggcgaggtgatgaac
ctgttgatgttcctctccacgtgggacggcaaggtgccccagccggccatcctgaagccc
aggccgttctggacgggcaagcagatcttcagtctcatcatccccggccacatcaacgtc
atccgtacccacagtactcaccccgacgaggaggacagcggcccctacaagcacatctcc
cctggagacacaaaggtgattgtggagaacggcgagctgatcatgggcatcctgtgtaag
aagtccctgggaacgtccgctggctcgctggtccacatctcctacctggagatgggccac
gacgtcacccgcctcttctactccaacattcagacggtggtcaacaactggctgctcatt
gagggtcactccatcggtattggtgactccattgctgacgcaaagacttacttggacatt
cagaacaccatcaaaaaggccaaacaggatgtgatagaggtaattgagaaggcccacaac
aacgagctggagccgaccccaggtaacacgctcaggcagaccttcgagaaccaggtgaac
cgcatcctgaacgacgctcgagacaaaaccggatcgtccgcccagaagtccctctcggag
tacaacaacttcaagtccatggtggtggctgggtccaaaggatccaaaattaacatctca
caggttattgccgtggtggggcagcagaacgttgagggtaagcgaatccccttcggcttc
aagcaccggacactgccccacttcatcaaagatgattacggccctgagagtagaggcttc
gtagagaactcgtatctggccggtctgacgccgacagagttcttcttccatgccatggga
ggcagagagggtcttatcgacacggctgtgaagactgccgagacgggttacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtcaaatacgacgccacggtgcgaaactcc
atcaaccaggtggtgcagctgcgttacggagaggacggcctggcgggagagagcgtggag
ttccagaacctggccacgctcaagccctcgcacaaggccttcgagaagaagttcaggttt
gactacagcaacgagcgagccctccggcgcaccctgcaggaggacgtggtgaaggacgtg
ctgaccaacgcacacgtgcagagcgccctggagcgcgagtttgagaagatgaaggaggac
cgggagatcctgcgggccatcttccccacaggggacagcaaggtggtgctgccatgcaac
ttggccagaatgatctggaacgcccagaagattttccgcatcaacccccggacccccaca
gacctcaacccactgcgggtgattgaaggtacccacgatctgagtaagaagctggtgatc
gtgaacggcgaagaccctctgagtcggcaggcgcaggcgaacgccactctgctcttcaac
atccacctgcgctccacgctctgctcgcgccgcatgaccgaggagttccgcctgagcacc
gaggccttcgactggctcctgggagagatcgaaaccaaattcaaccagtctatcacccac
ccgggcgagatggttggcgctctggctgcccagtccctgggagagcccgccacccagatg
accctgaacactttccattacgccggtgtgtcggccaagaacgtcacgctgggtgtgccc
cgtctcaaggagttgatcaacatctccaagcggcccaagaccccctcgctcacagtcttc
ctggtgggccaagcggctcgtgacgccgagagggccaaagacatcctgtgtcgcctggag
cacaccacactacgcaaggtgacagccaacactgccatctactacgaccccaatcctcaa
aacacagtggtgactgaggaccaggagtgggtgaatgtctactatgagatgccggacttt
gacgtgacccgcatttcgccctggctgctccgaattgagctggaccgcaaacacatgact
gaccgcaaactgaccatggagcagatcgctgagaagatcaacgctggattcggtgacgat
ctgaactgtatcttcaatgacgacaacgctgagaagctggtgctgcgaatccgtatcatg
aacagtgacgagaacaagttccaagaggatgaagaggtggtggataagatggacgacgac
gtgttcctgaggtgcatcgagtccaacatgctgacagacatgaccctgcagggtattgag
cagatcagcaaggtgtacatgcatcttcctcagacggacaacaagaagcgcatcatcatc
accgaggacggcgagttcaaggccctgcaggagtggatcctggagacggacggcgtggcg
ctcatgcgcgtcctgagcgacaaggacgtcgaccccgtcaggaccacctccaacgacatc
gtggagatctttaccgtgttgggtattgaggctgtgcggaaggctctggagagggagttg
taccatgtgatctcctttgacggttcctatgtcaactaccgccatctggccctgctttgt
gacaccatgacctgcagaggtcacttgatggccatcacccgtcacggcatcaaccgacag
gacaccgggccactcatgaagtgctcctttgaggagacggtggacgtgctgatggaggcg
tcgtctcacggcgagtgcgaccccatgaagggcgtgtcggagaacatcatgctcggccag
ctggcccccgccggcaccggctgcttcgacctgctgctggacgccgagaagtgcaagtac
ggcatggagatccccaccaacatccccggcatcagcgtgcccggaccaacgggcatgttc
tacggctccgccccgagcccgatgagcgccatgtctccggccatgaccccctggaacatg
ggagccacccctgcgtacggcgcctggtcgcccagcgtcgggagtggaatgacccccgga
gcggcgggcttctctcccagcgcggcgtccgacgccagcggcttctccccgggttactcc
ccggcctggtcccccacgccgggctctcctggatcaccggggcctgccagcccctacatc
ccctcgccaggtggcgccatgtctccaaattactctcccacctccccagcctacgagcct
cgctctcctggtggctacaccccgcagagccctggctactccccgacatcaccctcctac
tcgcctacttctccatcctactcccccaccagccccaactacagccccaccagcccctcc
tactccccaacctccccctcctactccccaacctccccctcttactcgcccacatccccc
agctattcacccacatctccatcctactccccaacttctccatcctactccccgacatca
ccctcttactcccccacttcgcccagctacagtccgacgtcgccgagctacagcccgacg
tcccccagctacagccccacctctccctcctactcgccgacgtcaccgagctactcgccc
acgtcgccgtcttattcgccgacgtctccatcctactccccgacatcgccctcctactcg
ccgacgtccccgagctacagcccgacgtcgcccaactacaccccgacgtcgccgagctac
agccccacctctccctcctactcgccgacgtctccgagctacagccccacctctccgaac
tacaccccgacgtccccgagctactcccccacctcgccctcctactcgccgacctctcca
tcctactccccctccagcccacggtacaccccgcagtctcccacctacaccccgagctca
ccctcctacagccccagctcgccctcctactccccgacttctcccaaatacacccccacc
tccccctcctacagcccaagctccccggagtacaccccgacatcccccaagtactccccg
acttctcccaaatactcgccgacctcgcccaagtacagccccacctcccccacctactcc
cccaccacacccaaatacagccccacctcgccgacttactcccccacgtccccgacctac
acccctaccagccccaagtactcccccacttccccgacctactccccgacctctcccaag
tactcccccacgtctcccacctactcgcccactagccccaagggctctacctacagcccc
acgtcccccggatacagccccacctcccccacctacagcctcaccagtcccgccatcagc
cccgacgacagcgacgaggagaacaactga
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integrated database retrieval system
