KEGG   Sardina pilchardus (sardine): 134060130
Entry
134060130         CDS       T10667                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil04382  Cornified envelope formation
spil04510  Focal adhesion
spil04512  ECM-receptor interaction
spil04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:spil00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    134060130 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134060130 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    134060130 (col4a5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    134060130 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:spil04147]
    134060130 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:spil00536]
    134060130 (col4a5)
Exosome [BR:spil04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   134060130 (col4a5)
Glycosaminoglycan binding proteins [BR:spil00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   134060130 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 134060130
NCBI-ProteinID: XP_062372727
LinkDB
Position
16:14178741..14222148
AA seq 1680 aa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 seq 5043 nt   +upstreamnt  +downstreamnt
atgtctagaaactttaagaatctccagatcctcgctgtaggtctgctgttcatttgcttg
tgggttcaggaatcagaatcagcggcctgccatggctgcactgggtcgaagtgtgactgt
agtaacgtgaaaggagacaagggtgacagggggcttcctggacttcagggccagccgggc
gtacctggattcccaggaccagagggtccgatcggacctcgtggcgagaagggcgatgac
ggacccgggggccccagcggtcccaaaggaataagaggccctcccggattaccaggtttc
ccagggacaccaggaattcccggtctgccaggacaggatggcccccctggacccagggga
actccaggctgtaacggaacaaagggtgagagaggattctccggaacttcaggccttcca
ggaattgagggacaaccaggtcctccaggattccctggccagaagggagaacccggtgaa
gtaattcctgttgaccgctacggacaaaaaggcgaatatggcccaggcggtctcccaggt
cctcgggggattcccggaccttctggacttccagggccgcttggtccccctgggcctaga
ggttatgagggtcgttctgggcctccaggaccacctggaccaaagggaaacatgggactg
aacttccaggggccgaagggagacaagggtgaacaggggcccgtaggacaaccaggacct
cctggacaagtaggagaactgcagagccaaggacaaacaacattccagcaaggagagaag
ggtgaccgcggcccaagtggccctcctggtaatcccggactgcctggaccacctggtatc
tcgggaggatccaaaggagacaaaggagagcctggcgagtatggtaaaagggggaaacct
ggaaaagatggtgacccagggccagctggatttcctggttctaaaggagaccctggtgcc
ccaggattgcctggtcgtgatggcgaaagaggtgacaaaggagaccgtggttaccctggg
cctccaggacaggtggtgacaggtccctcgtcaactgcaacaggccagaaaggagatcgt
ggattccctggaagccctggaagaaaaggagacagaggaccaccaggtttaactggacct
tcaggccagccaggagcaccaggtattggagagccaggtcctgctggtagaccaggattc
cctggcgagagaggccagaaaggtgaagagggacaaccaggagtttctttgccggggcca
cctgggagaagcggagcatcaggattaccgggtcctcctggaccaccaggtcccccagga
tcttccactagtgttgacaactgtgtcagtggtcctccaggtctacctggcctacaggga
gatcgtggatatccaggggagactgggcagaagggtgaaaaaggtgacacatgtgtcaac
tgtttctccagtggaaatcctgtccctggccctgtaggcccaccgggcacacctggactt
ccaggctctcctggatatccgggaactaaaggtgaaagaggctaccccggaggaccggga
tctccaggacctgccggatcacctggacttcagggggcacctggatttactggtgagaag
ggtgatcctggagacgccatatctgtatctggcgtaaagggtgagaagggagactccggt
ttccctggacctgctggcttacctggcctggatggcagacctggacgtgatggaggccct
ggtgcacctggccccaaaggaaatcctggctctctacaaacgaagggacaacctggtccc
tctggagaacctggcactccaggccccccaggtgacaggggttcacctggaggccccgga
tttggtcctcaaggtcctgcaggagagaagggtatccagggagtgtcaggaagacctgga
tccgctggcgcaccaggactaaagggagaacctggccaaaccattgcagagaaaggcgcc
ccaggaccaggaggcagagatggagaacctggtttaccaggaagcccaggcttaccaggt
ggaccaggacaaccaggtttcccaggggtacctggaggaaaaggagacccaggtattcct
ggtattggccttcctggacctcccgggtctaaaggattccctggcagtcctggaacacca
gggacatctggttcttcagggcgaccaggtttggatgggcttcccggtaccccaggaaca
cctggaccaaagggagagccaggttatggtttgccaggcccacagggacctcctggtttc
ccaggtggaaaaggactttctggacctaagggagaccctggctttccaggaaatccaggt
ggtcctgggcgcccagggttaaatggaggccctggcagtaaaggtgacagtggtgttcct
ggtttacctggatctcgtggccctccaggcagccctgcttttggtggtccaggtctgcca
ggtccagctggaggtcctggacctatgggttccccaggatatcccggtgcaaaaggagaa
gctggtaatcctggcctcccagggcaggatatccaagggttgccaggagacagaggtaat
cctggtctccctggatctcctggatctccaggcccaggaggcccacctggcggatctggc
agagatggacttcctggactgcctggtcagaaaggagacatgggtgtaatgggccctcca
ggacctggtggtggccccggtggacccggtggaccaggattcccaggtccaaaaggtgaa
aacggttataatgggagaccaggcaatccaggtacccctggaggaaaaggagagaggggt
gatcctggacttcctggtgctcctggtccttccagtggtcctcaagtctataaaggagtt
aaaggagagccaggcgctccaggtgggggaggtattccaggtcagaagggtatttctggt
cttccaggagatcctggaattccaggtcaggatggacgacccggagtacctggaccttca
ggtcccaaaggagatcctggttttaatggaagccctggtggccctggcgctccaggtgct
aagggagccatgggtgaaatgggattccccggaccatctggacttaagggacttgctggt
acgccaggatcttcaggaagacctggctcacctggatctccaggatttccaggatctaag
ggggatgccggtcttccaggatttggggcaccaggaagcccaggacccaagggtgaacct
ggaactcccggctatccaggaagcccaggacccaaaggacaggctggtggtccaggctcg
ccagggttcaatggtggcccaggagccaagggtgacccagggctaccaggatttcaagga
ccacctggtattcctggtccaaagggtctagatggaatccctggtcccccaggtatcaat
ggaccccctggtaggcctggcgaatcaggccgtcctggatcatctggttacccaggagat
aaaggtcaagctggtcgtgatggaatccctggaccagatgggttgaaaggagatccaggt
cctcctggctttggaacccctggttcccctggtctaccaggattcccaggtccgaaagga
gatatcggccttcctggttcccctggaagtcctggctaccctggaccaaagggcgaggca
ggatttccggggtcacccggaggccctggcggtgttggttctcctggtcctccaggtgtc
actgtgcaggggcctaaaggtaacccgggctctccaggtgctcctggaagacttggtccc
ccaggccctgaaggcccacgaggtctcccaggcagcggaggtgttaagggggagaagggc
ttccctggaacccctggcagcccaggattccctggaccgaagggtgaatatggaccatct
ggattgccggggactccaggtagcccaggattctctggaccgaaaggagataacggactt
cctggtgttccaggattcccaggacccaaaggtctgtcaggtcctggtggtatccgtggt
ccccctggtgaccctggtagctcaggtgctacaggtccccctggtgccccaggtgtggct
ccaactcctattgtcttgaagggagaacctggtcccccaggcaaccccggtctgcctggc
aacagagggcctcctggtccagctggattggaaggcttgtccggcccacccggagaacct
ggaaatcccggccccgaaggccctccaggattcagcggcccccctggaaggaaaggagac
agcggaccagcaggacagccaggtcagcgcgggtaccctggtcctcccggctctgacggc
ttgcaaggccagcctggtctccctggaccggggtcggtggcccacggcttcctgatcacg
cgccacagccagtcttcggacgtcccccaatgccctcagggcaccagtgtcatctacgac
ggctactcactactgtacgtgcagggcaatgagcgcgctcacggacaagatctcggtacg
gcgggcagctgtctgaagcgcttcagcaccatgcccttcatgttctgcaacaccaacaac
gtgtgcaactttgcgtcgcgtaacgactactcgtactggctgtccaccccagagcccatg
cccatgagcatgtcccccatcaccgggagcagcatcaagcctttcatcagcaggtgttct
gtgtgtgaagctccggccatggtgatcgccgtgcacagccagaccatccagatcccctca
tgccctcagacctgggagcccctatggatcggctactccttcatgatgcacaccagcgca
ggggcagagggttcaggtcaggccctggcctctcctgggtcttgtcttgaggagttccgc
tcttcacctttcatcgagtgccatgggcgcggcacctgcaattactacggcaactcttac
agcttctggttggcaactgtggatcaaaatgacatgttcaggaagccacagtcagaaaca
ctgaaagcaggaaacctgtcatcgcgtgtgagccgttgcgtggtctgtatgaagaggacg
taa

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