Sardina pilchardus (sardine): 134061691
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Entry
134061691 CDS
T10667
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spil04121
]
134061691 (pdzrn4)
Enzymes [BR:
spil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134061691 (pdzrn4)
Ubiquitin system [BR:
spil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
134061691 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ_6
PDZ
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
134061691
NCBI-ProteinID:
XP_062373435
LinkDB
All DBs
Position
17:complement(10896511..10922277)
Genome browser
AA seq
699 aa
AA seq
DB search
MSQVGPNSIAARDGRIREGDRILQINGHDVQDKEEAVALLSNEECKSIVLLVTRPEMQME
ESWLDEEHSEFLEELKMEILQEQRNEENQQLDARVHQDQEGVAVGSPSKQREQRIRAEQH
DHNRESETPHTSSPQRRLRESFGLAEHRLSVSLGRDIESGPGSGLASLGLSSGRSGVGGS
VQRVERDLFQQHLLELKCQIRNRGECGLYYARSSTIECSGGGGVGVERELRMLNEELRSI
ELECQSIMQAHQLRKTQSDDLDLDYARPTSPASANVQQRAAKAARGQQQQQQQKGRGGRL
ADIHEYPERWDTGVGGGNNNNKQRDNRDNSSSAYNTAESARSTPLGLIEHSRSHSPESSQ
QQRRVNLTNLKNLHGSAHSSPTHTLAHTHTSSPRHQYHQHTHTHTRSHTLPTPSSQSART
HQTASTPGSPNRTLPAPSNATANSSSLDQSPSNPSESDPALPADDERVDRKRGHHHPHQR
RQPAWHASPYHHHATTATTTAGSANAASARNYQSYVQLLQQHSSSSLEFSQSQLSLLSLR
PGRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAASELKM
GRYWSKEERKQQLARAREQRRRREFMQRSRLECLKETTGGATGTRREVNILELSQRKMMK
RRNKKILDNWMTIQELMTHGARVPEGTKVHNAFLSVTTV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggtgggccccaacagtattgcagccagagatggacgtatcagagagggagac
agaatactgcagattaacggtcatgatgtgcaggataaagaggaggcggtggctcttctg
tccaatgaggagtgcaaaagcatcgtgcttctggtgaccagaccagagatgcagatggag
gagagctggctggatgaggagcacagtgagttcctggaggagctcaagatggagattctg
caggagcaacgcaacgaggaaaatcagcagctggatgctcgagtgcaccaggaccaggag
ggcgtggcggtcggctccccgtccaaacagcgagagcagcggatcagagcggagcagcac
gaccacaaccgggagtccgagacgccgcacacctcctccccacagcgccggctccgagag
agcttcggcctcgccgaacaccgcctgagcgtcagcctgggccgcgacatcgagtccggt
cccgggtcgggcctggcgtcgctgggtctgtcctccgggcgaagcggcgtcggtggtagc
gtccagcgggtggagcgggacctcttccagcagcacctgctggagctcaagtgccagatc
cgcaaccggggcgagtgcggcctctactacgcccgcagcagcaccatcgagtgcagcgga
ggaggaggcgtgggggtggagcgcgagctgcggatgctcaacgaggagctgcgcagcatc
gagctggagtgccagagcatcatgcaggcgcaccagctacgcaagacgcagagcgacgac
ctcgacctcgactacgcccggcccacgtcgcccgcgtccgccaacgtccagcagcgggca
gccaaggcggccagaggtcagcagcagcagcagcagcagaagggtcgcggggggaggctg
gcggacatccacgagtaccccgagcgctgggacaccggcgtcggcggcggcaacaacaac
aacaagcagcgggacaacagggacaacagctcgagcgcgtacaacacggcggagagcgca
cggtccactccgctgggcctcatcgagcactcgcgctcgcactcgccagagtcctcgcag
cagcagcgtcgcgtcaacctgaccaacctcaagaacttgcacgggagcgcgcacagctcg
ccgacacacacgctcgcacacacacacaccagcagcccgcggcaccagtaccaccagcac
acacacacacacacacgctctcacaccctgcccaccccctcgagtcagtcggcgcggacc
catcagacggcctccacgccgggcagccccaaccggaccctccctgccccctctaatgca
accgccaactcgtccagcctggaccagagccccagcaacccctccgagtcggacccggcc
ctccccgccgacgacgagagggtggaccgcaagaggggccaccatcacccccaccagcga
cggcagccggcctggcacgcctccccgtaccaccaccacgccaccaccgccaccactaca
gcgggcagcgccaacgccgcgagcgcccgcaactaccagagctacgtccagctgctgcag
cagcactcgtcctcgtcgctggagttctcccagagccagctgagcctcctcagcctgcgg
ccgggacggccgggcgagccgcgcctggagtggaaggtcaaagtgcgggcggacggcacg
cgctacgtggcccggcgaccggcccgcgaccgcatcctgcgggagcgcgcgctgaggatc
cgcgaggagcgcagcggcgggatgaccacggacgacgacgcggccagcgagctcaagatg
ggccgctactggagcaaggaggagcgcaagcagcagctggcgcgcgccagggagcagcgg
cgcaggagggagttcatgcagcgcagccgcctggagtgcctcaaggagaccacagggggc
gccaccgggacgcggagggaggtcaacatcctggagctgagtcagaggaagatgatgaag
aggcggaacaagaagatcctggacaactggatgaccatccaggagctgatgacccacggg
gcgcgcgtgcccgagggcaccaaggtccacaatgccttcctgtcggtcaccaccgtgtag
DBGET
integrated database retrieval system
