Sardina pilchardus (sardine): 134061912
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Entry
134061912 CDS
T10667
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03013
Nucleocytoplasmic transport
spil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134061912 (upf2)
03015 mRNA surveillance pathway
134061912 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134061912 (upf2)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134061912 (upf2)
mRNA cycle factors
P-body specific factors
134061912 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
134061912
NCBI-ProteinID:
XP_062373726
LinkDB
All DBs
Position
17:complement(9590016..9619602)
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AA seq
1283 aa
AA seq
DB search
MPAERKKSVNMEDKEPGNSNKDKDKEREGDRRPTSSREKAKDEPKAGKKDGGKAAEEKRR
RIEDEKRKKEEKERKKKEEEKLKAEEEQKKKEEEEKRLLEEEEKRKQEEEAKRQREEEAA
LLKETEEAQQLHQEAWERHQTRKELRARNQTAPDSRPEEAFFGRLDSSLKKNTAFVKKLR
TLTEQQREALAHDFAGLNLSKYIGEAVSSLVEAKLKLSDVSCAVRICSLFHQRYAEFAPL
LLQAWRKHLDARREEKAPNVSKLRTDLRFIAELTAVALFTDKEGLSLIYEQLKGITGADR
ETHTHVSVVISFCKHCGDDIAGLAPRRVKAATDKFGLAFPPSEIIGAEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTLTLADL
LDENMPELPIDKSVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVP
AILFKDNDKSGQAKVGDDAKDKEAKESKEATSTEELELELEALDIADDPLELEPTDEVEN
EELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQMPNCVNRDLIDKAAMDFCMNMNTKSN
RRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINI
ETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
HLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLY
KDLSKVTTEKVLRQMRKLSWQDPETKSYLVCCMVNIWNVKYNSIHCVANLLAGLVAYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRVSSAKFLGELYNYRMVESAVIFRTLFSFTSFG
VNPDGTASPLDPPEHHFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSLD
VWTKEHPFPIDIDYMISDTLELLRPKMRLCTSLEEATRQVTELEREVMVKLGLMMGKDGR
CPSSMGDGEGLDEEDDDDDEEGGADTEEQSGNESEMNEQEEEEGSENEEEEREEEEEENT
DYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGESVKVH
QLDVAIPLQLKSQLKKGPPPAGDGDAEINDTMQFVMLTRKGNKQQFKILNVPLSSHLAAN
HFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKG
APNADLIFKTGGRRQDARARRRL
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgtaagaagtccgtaaacatggaagacaaggagccagggaacagtaac
aaggataaagacaaagagagagagggtgaccgtcgtcccacctcctcgcgggaaaaggcg
aaagatgagcccaaagcaggaaagaaagatggagggaaagcagcagaggagaaaaggaga
aggattgaggacgagaagagaaagaaggaagaaaaggagcgtaagaagaaagaggaggag
aagctgaaagctgaagaggaacagaagaaaaaggaggaagaggagaaaaggctgctggag
gaagaggagaagaggaagcaggaggaggaagccaagagacagcgagaggaagaggcagct
ctactcaaggagacggaggaggcgcagcagctgcaccaggaggcctgggagcgccaccag
acgcgcaaggagctgcgcgcccgcaaccagacggcgccggactcccgtcccgaggaggcc
ttcttcggccgcctggactccagcctgaagaagaacacggcgttcgtgaagaagctgcgc
acgctgaccgagcagcagcgcgaggcgctggcgcacgacttcgccggcctcaacctcagc
aagtacatcggcgaggcggtcagctcgctggtggaggccaagctcaagctgtcggacgtc
agctgcgccgtgcgcatctgctcgctgttccaccagcgctacgccgagttcgcgccgctg
ctgctgcaggcgtggaggaagcacctggacgcgcggcgcgaggagaaggcgcccaacgtc
agcaagctgcgcaccgacctgcgcttcatcgccgagctcaccgccgtggcgctcttcacc
gacaaggagggcctgtcgctcatctacgagcagctcaagggcatcaccggcgccgaccgc
gagacgcacacgcacgtctccgtggtgatcagcttctgcaagcactgcggcgacgacatc
gccgggctggcgccgcgccgcgtcaaggccgccaccgacaagttcggcctggcgttcccg
cccagcgagatcatcggcgcggagaagcagcagcccttccagaacctcctgcgcgagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacatcgagcgg
cagaaccggcgcatcctgcactccaagggggagctgagtgaggaccgccacaagcagtat
gaggagttcgccacctcctaccagaagctgctggccaacaccctgaccctggccgacctg
ctggacgagaacatgcctgagctgcccatagacaagtccgtgcaggaagagcacggccca
ggcatcgacatcttcaccccaggcaagcccggcgagtacgacctggaggggggcatctgg
gaggacgaggatgctagaaacttctacgagaacctggtggacctcaaggccttcgtccct
gccatcctcttcaaggacaacgacaagagtggccaggccaaagttggagatgacgccaaa
gataaagaagctaaggagagtaaagaggccaccagtacagaggagctggagttggagctg
gaggctctggacatcgctgatgaccccctggagttggagcccacagacgaggtggagaac
gaggagctcgccaagaagctactggacgagcaagaacaagaggatgaagaggccagcacc
ggctcccacctgaagctcatcgtagatgccttcatccagcagatgcctaactgtgtcaac
agggacctgatagacaaggctgccatggatttctgtatgaacatgaacacgaaatccaat
cgcaggaaactggtccgggcgctcttcactgtccccagacaaaggctggacctgctgccg
ttctactctcgcctggtggccactctgcacccctgcatgtcagacgtggctgaggacctg
tgctctatgctcaaaggagacttcagattccatatccgcaagaaggaccagatcaacatc
gagaccaagaacaagaccgtcaggttcatcggagagctggccaagttcaagatgttctcc
aaaacggacacgctgcactgcctgaagatgctgctgtctgatttctcccatcaccacatc
gagatggcctgcaccctcctggagacctgtggccgcttcctcttcaggtcacctgagtct
cacctgaggaccagcgtactcctggagcaaatgatgcgtaagaagcaggcccagcacctg
gatgcgcgctacgtcaccatggtggagaacgcctactactactgcaaccccccgcccatg
gagaagaccgtgcgcaagaagaggccgcccctgcaggagtacatccgcaagctgctctac
aaggacctctccaaggtcaccaccgagaaggtgttgcgccagatgcgcaagctgtcgtgg
caggacccggagaccaagagctacctggtgtgctgcatggtcaacatctggaacgtcaag
tacaacagcatccactgcgtggccaacctgctggccggcctggtggcctaccaggaggac
gtgggcatccacgtggtggacggggtgctcgaggacatccgcctggggatggaggtgaat
cagcccaagtttaaccagcggcgcgtgagcagtgccaagttcctgggcgagctgtacaac
taccgcatggtggagtcggcggtgatcttccgcacgctcttctccttcacctcgttcggc
gtgaaccccgacggcacggcctcgcccctggacccgcccgagcaccacttccgcatccgc
ctcgtctgcacgctgctcgacacctgcggacagtacttcgaccgcggctccagcaagagg
aagctcgactgcttcctcatctacttccagaggtacatctggtggaagaagagcctggac
gtgtggacgaaggagcacccgttccccatcgacatcgactacatgatcagcgacaccctg
gagctcctccggcccaagatgaggctctgcacctccctggaggaggccactcgacaggtc
accgagctggagagggaggtcatggtcaaactaggcctgatgatggggaaggacggccgc
tgccccagctccatgggtgacggagaggggctggacgaggaagacgacgatgatgatgaa
gagggcggcgctgataccgaggagcagtctggaaacgagagtgagatgaacgagcaagag
gaagaggagggctctgagaatgaggaggaagagagggaggaagaggaggaggagaacacc
gactacctgactgactccaacaaagagaatgaaacggatgaagaaaacaatgaggtgact
atccgtggaggtggcctgaagcacgttgcctgtgctgaagatgaagatttcatccaggcc
cttgataagatgatgttggagaacctacagcagcgtagcggtgagtcggtgaaggtgcac
cagctggacgtggccatcccgctgcagctgaagagccagctgaagaaggggccgccgccc
gccggggacggagacgccgagatcaacgacaccatgcagttcgtcatgctcacacgcaag
ggcaacaagcagcagtttaagatcctgaacgtgcctctgtcgtcccacctggccgccaac
cacttcaaccagcagcaggccgagcaggaggagcgcatgcgcatgaagaagctcacgctg
gacatcaacgagcgccaggagcaggaggactaccaggagatgatgcagtccctggcccag
cgtccggctccggcgaacaccaatcgtgagcggcgtcctcgttaccagcaccccaaaggg
gcgcccaacgcagacctcatcttcaaaacagggggcagaaggcaggatgctagggccagg
cgtcgactgtga
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integrated database retrieval system
