Sardina pilchardus (sardine): 134062084
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Entry
134062084 CDS
T10667
Symbol
runx1
Name
(RefSeq) runt-related transcription factor 1 isoform X1
KO
K08367
runt-related transcription factor 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
134062084 (runx1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spil03000
]
134062084 (runx1)
Transcription factors [BR:
spil03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
134062084 (runx1)
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Gene cluster
GFIT
Motif
Pfam:
Runt
RunxI
Motif
Other DBs
NCBI-GeneID:
134062084
NCBI-ProteinID:
XP_062373941
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Position
17:17093433..17157087
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AA seq
458 aa
AA seq
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MASNSIFESLSTFQPCFTRGDPAPGRRFTPPSTTLGSGGKMSEGLPLGAQEGSGATLVSK
LRMADRSMVEVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDIPDGTLV
TVMAGNDENYSAELRNATAALKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYQ
RAIKITVDGPREPRRHRQKLEESVKPSALAFSEQLRRSAMRCSPNPNARNTLTTPPFGSP
PHTQLPDSRQMQTSPSWSYEQPYPYLSQISTPTVHPTTPISPSRNSIHCSELTAFSDPRM
TLERPFTSLSTIPDGRFSDPRMHYPTGAFPYPPTPVTNAIGIGMSAMTGPTGRYPTYLPP
PYPSASSQGQGGPFQASSSPYHLYYSTTAGSYQFSMMAGGGGGERSPPRILPPCTNASTG
STLLHPSLPNQSDVVVETEGSHSSSPTNMSAEAVWRPY
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaacagcatcttcgagtccctctccacctttcagccctgcttcactcgagga
gaccctgccccggggcgccgcttcactcccccctccaccaccctggggtccggtgggaag
atgagcgagggtctccccctcggcgcccaggagggcagtggtgccaccctggtgagcaag
ctccgcatggcggacaggagcatggtggaggtgctgtccgaccatccaggggaactggtg
cggaccgacagtcccaacttcctgtgttccgtgcttcccacgcactggcgttgtaacaag
accctgccaattgcatttaaggtggtggccttgggagacattcccgacgggacgctggtg
accgtgatggcggggaacgacgagaactactcggcggagctgcgcaacgccacggcggcc
ctcaagaaccaggtggcacgcttcaacgacctgcgcttcgtcggccgaagcggtagaggt
aaaagcttcactctgaccatcaccgtgttcaccaacccaccccaggtggccacctaccag
cgcgccatcaagatcacggtggacgggcctcgagaacctcgccgacacaggcagaagctg
gaggagtcagtgaagcccagcgctctggccttctctgagcagctcagacgcagtgccatg
cggtgcagccccaaccccaacgcccgcaacacactcaccacgccgcccttcggcagcccc
ccacacacacagctgcccgactccaggcagatgcagacgtctccgtcctggtcctacgag
cagccgtacccctacctgagtcagatctccacgccgaccgttcacccgacgacgcccatc
tcgcccagtcgcaactctattcactgctctgagctaacagcattcagtgacccccgcatg
accctggaacgacctttcacctcactgtccacaattccagatggccgcttctcagaccca
cgcatgcactacccgaccggagccttcccgtaccctcccacgccggtcaccaacgccatc
ggcatcggaatgtcagccatgacgggcccgaccggccgctaccctacctacctgcctccg
ccttacccctctgcctcctcccaaggtcaaggtggtccattccaggccagctcgtctccc
tatcacctctactacagcacaacagctgggtcataccaattttccatgatggcgggggga
ggtggcggggagcggtcacctcctcgcatccttcccccctgcaccaacgcctccaccggc
tccaccctcctccacccctccttgcccaatcagagtgacgttgtcgtggagacggaggga
agccacagtagctctccgaccaacatgtcggcagaggcggtgtggcggccatattga
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