Sardina pilchardus (sardine): 134062168
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Entry
134062168 CDS
T10667
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134062168 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spil03400
]
134062168 (msh2)
DNA repair and recombination proteins [BR:
spil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134062168 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
134062168
NCBI-ProteinID:
XP_062374072
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Position
17:complement(4140703..4148498)
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AA seq
942 aa
AA seq
DB search
MAVQPKQNLSMDSASESGFLSFFFSMPEKPDTTFRIFDRNDYYTVHGKDATFAAKEVFKT
NQVIKNLGSGSKKLESVVLSKMNFESFVRDLLLVRQYRVEVYRNKAGGKSTKEHDWQVEY
KASPGNLAQFEEILFGGGGAPGEGVAGVVGVRVGSGPDGQRVVGVGYVDSTLRKVGVCEF
PDNDQFSNLEALLVQMGPKECVLPMGDAGGDTGKLRQVVQRGGILLSDRKKSEFTTKDIV
QDLDRLLRARKGETVSSAALPEMEKQIAMSCLAAVIKFLELLSDEANFNSFQITTFDLNQ
YMRLDNAAVNALNLFPGSDTTVGSHSLSGLLNRCRTPQGQRLVNQWIKQPLIDKNKIEER
LNLVESFVEDSELRQSCQEDLLRRFPDLNRLAKKFQRHSATLQDCYRAYQAVGQLPALVL
ALQRYSGKHEVLLNAVFITPLNDLISDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTLS
ELRENMDRLEKGMQSALTSGARELGLDGGKTMKLESNAQIGYFFRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTKNREEYEEAQNAIVKEILSIASGYMDPLHTLNEVT
AQLDAVVSFALVSNAAPVPYVRPRILDKGSGRLFLKGSRHPCVEAQDDVAFIPNDVSFTR
AQETFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCEEAEVSVVDCVLARVGAGDSQI
KGVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEFIATELRSFCL
FATHFHELTALAQQLPTVHNLHVTALTSHDTLTMLYRVKKGVCDQSFGIHVAELANFPPH
VIASAREKALELEEFQDLAPHGTEGESDSEGPEAKRRCLQKQEGESLIEGFLAQVKALPL
KGLTQEAVKQRLSELKAELTAHNNSFVNEIVNRASGSKLVST
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccaaagcagaatctgtccatggacagtgcatccgaatcgggtttctta
agcttttttttctctatgccggaaaaaccagacactacatttaggattttcgatcgcaac
gattactacactgtgcatgggaaagatgccacctttgcagcaaaagaggttttcaagact
aatcaagtcatcaaaaacctcggatcagggagcaagaaacttgagagcgtggtcctcagt
aaaatgaacttcgagtcgtttgtgagagatttgctgctcgttcgtcagtaccgcgtcgaa
gtctacaggaacaaggctggcggcaagagtaccaaagagcacgattggcaagtggaatac
aaggcatcacctggaaatctggcccagtttgaggagattctgtttggtggtggtggtgct
ccgggggaaggtgttgctggagtggttggggtgcgtgttggctctgggcctgatggccag
cgtgtggtcggcgtgggttatgtcgactccaccctcaggaaagtaggtgtttgtgagttc
cccgacaacgaccagttctccaacttggaggccctgctggtacagatgggaccaaaggag
tgtgtgctgccaatgggggacgcaggcggagacacaggcaagcttcgacaggttgtccag
cgaggaggaattctgttgtcggatagaaagaagtccgagtttaccacaaaggacattgta
caggatttggacagacttttgagagctcgcaagggtgagactgtctccagtgctgccctg
cctgagatggagaaacagattgccatgtcctgcctggcagcagtcatcaagttcctggag
cttctgtctgacgaagcaaacttcaactccttccagatcacaacctttgacctaaaccag
tacatgcgcctggacaacgctgctgtgaacgcgctcaaccttttccctgggtcggacacc
actgtaggctcccactccctctcagggcttctgaacaggtgcaggaccccacagggccaa
cgcctggtgaaccagtggatcaagcagcctctgattgacaagaataagattgaggagagg
ctgaatcttgtggaaagctttgtggaggactctgaactgaggcagagctgtcaggaggac
ttgctccggcgcttccctgacctcaaccgcctagccaagaagttccagaggcacagtgcc
accctgcaggactgttaccgtgcctaccaggccgtgggtcagctccccgcgctggtcctg
gccctgcaacgctacagtgggaaacacgaggtgctgttgaatgccgtttttatcactcca
ctcaatgacctcatctccgatttctccaagttccaggagatgattgaaaccacgctggac
atgaatcagattgagcaccatgagttcctggtgaagccctcgtttgaccccacactaagc
gagctccgggagaacatggacaggctggagaagggcatgcagtcagcgctgaccagtggg
gccagggaactgggcctagatggaggaaagactatgaagttggagtccaatgcccagatt
ggctactttttcagagtaacctgtaaggaagaaaagagtctgaggaacaacaagaagttc
accacactggacgtacagaagaatggtgtgcgcttcactaacagcaaactgagctcactg
aatgaagagtacactaagaacagagaggagtatgaagaggcccagaatgccattgtgaag
gagatcctcagcattgcctcaggttacatggacccgctgcacaccctgaatgaggtgact
gcccagctggacgcagtggtgagttttgcgctggtgtccaatgctgccccggtgccgtat
gtgcgtccacgtatactggacaagggctcgggtcgactgttcctcaagggctcccgccat
ccctgcgtggaggcacaggatgacgtggccttcatccccaacgacgtgtccttcacccgc
gcccaggagaccttccacatcatcacaggtcctaacatgggaggcaagtctacctacatc
cggcaggtgggcgtgattgtgctgatggcgcagatcggctgctttgtgccgtgtgaggag
gcggaggtgagcgtggtggactgcgtgttggcacgcgtgggtgccggagacagtcagatc
aagggcgtgtccaccttcatggctgaaatgctggaaacagcagccatacttcgctcagcc
acagaagactccctgatcatcattgatgagctgggccgaggcacgtccacctatgatggc
tttggcctggcctgggccatctcggagttcatcgccactgagctacgctccttctgcctg
tttgctacgcacttccacgagctgaccgcgctggcccagcagcttcctaccgtccacaac
ctgcacgtcactgcactgacctcccacgacaccctcaccatgctctacagggtcaagaaa
ggcgtgtgcgatcagagctttgggatccatgtggcggaactggccaacttccctccacat
gtgatagccagcgcgcgggagaaagccctggagctggaggagttccaggacctcgctcct
catgggactgaaggggaaagcgactctgagggacctgaggccaagagacgctgccttcag
aagcaggagggggagagtctgatcgagggattcctggcgcaggtgaaggccctgcccctg
aagggcttgactcaggaggctgtcaagcaacggctctctgaactcaaggctgagctcaca
gctcacaataacagctttgtcaacgagatcgtcaatcgggcttctggcagcaagctggtc
tccacctga
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