Sardina pilchardus (sardine): 134062193
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Entry
134062193 CDS
T10667
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spil03000
]
134062193 (rc3h1b)
04121 Ubiquitin system [BR:
spil04121
]
134062193 (rc3h1b)
Transcription factors [BR:
spil03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
134062193 (rc3h1b)
Ubiquitin system [BR:
spil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134062193 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
Lipoprotein_18
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
134062193
NCBI-ProteinID:
XP_062374117
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All DBs
Position
2:10112958..10137344
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AA seq
1086 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKLQPVALITDPEDTKHYDEARQCVEELALYLKPLSSIRGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGVLLPDDGVPLEAVPRKPSPLT
NGIVAAGSGAQMPQLVARGADPTYDLRKPKLDSSSMSAPGSPPDSIPSDHLPMPKQMAVV
PRAQMYPQQQPEMFYPETRPPPSGSQYDGPPYQTGNPYPYQAPPYVQRYIRNPPPPNESS
VPPYQESYPSYVPERQYPAHSGPAFSQGFPPQPHYDSRRHTPYPGHPPPQSYAPPRDEIR
MSPVPVDVPPAPMPPPPAGAAGSLYHPDPRERYPPEGYPPHGPHPGHMRPYVRDPYSRSQ
PSLDYLHRRRKEIMAQLEERKVISPPPFAASPTLPHNFPNDYPQEYLEESSKAFGKGREQ
DYAGQYSPWSCDTIGSYIGSKDAKSKDLMGGVEMMNVEGKGLRDPPLEAQRRSADAKDDD
PIIPFGSLPTVSRFGAISRTSKTGYQTTGPVQAMASSQGSGPKHMTTAAEYSYGNHPAWG
GASYPQQHQNMTAQGHFSERLPMPPPDRDQLKMELQQVNQQISQQTQAASNSLLLQREAS
AMAAQPAGGKWPAGGAVSSEQLSLELCHVEREIGKRTREMAMENQVAHEYKMKASENGQA
ERKAQLDELSLALGEVSNGSSSIVSEASATMLSLSSKTSSLSLCSADPTPASGADHQKNG
VVHSCS
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagccccacaatggacagaatttttgttgtgtccaatatgtacacaaaca
ttcgaagagacagtgcggaggcccatcagcttgggctgtggccacactgtctgcaagatg
tgcctgaacaagctgcaccgaaaagcctgtcccttcgatcagactgctatcaatacagac
atcgagcagctgccagtcaactcggccctgcttcaactggtggggggtcaggtgccaaaa
ctgcagcctgtggcccttattactgacccagaggacaccaagcactatgatgaggctcga
caatgcgttgaggaactggccctctacctcaaacccctcagcagcatcagaggagtgggc
ctcagtaatgcagcccagagcatgcttagccggcccatgcagcggaaactggtgacgctg
gtgcactgtcagctggtggaggaggagggccgagtcagggccatgcgagcggcccgttct
ctgggggagaggaccgtcacagagctcatcctccagcaccagaacccccagcagctctcc
tccaacctctgggctgctgtgcgtgcccgtggctgtcagttcctgggtccagccatgcag
gaggaagccctgaagctagtcctattggcactagaggatggctcagccctgtccaggaaa
gttctggttctgtttgtggtccagagactggagccccgattcccccaggcatcaaagacc
agcatcggtcatgtggttcagctgctctacagagcttcctgctttaaggttacaaagcgt
gatgaggactcatcgctaatgcagttgaaggaggagttccgcacgtatgaggcgctgcgt
cgtgagcacgactcccagatcgtgcagatcgccatggagggggggcttcgcattgcccct
gaccagtggtcctccttgctctatggggaccagtcccacaagtcccacatgcagtccatc
atcgacaagctgcagacgccagcttcgtttgctcagagtgtgcaggagttgaccatcgca
ctgcagaggacgggcgatccggccaaccttaaccggctcagacctcatctagagctgcta
gccaatattgaccccagtccagatgccccaccacccacctgggaacagctggagaagggc
ctggttgctgtgaagacagtcgtgcatggcctggtggacttcatccagaatcacagcaag
aagggaacagatcagcaacagcccccgcagcacagcaagtataagacgtacatgtgccgt
gacatgaagcagaaagggggctgtcccaggggagccagctgcaccttcgcccactcacag
gaggagctggagaagtaccggaagatgaacaagcgcttggcagctcgtctaccgggtgta
ttgttaccagatgatggggttcccctggaagctgtgccccgcaaaccttcccccctcacc
aacgggattgtggccgccggctctggggcgcagatgccacagctagtcgcccgcggtgcc
gaccccacctatgatctgcggaagcccaaactggactcctcaagcatgagcgccccaggc
tcaccaccggactcgattccatcagatcacctccctatgcccaagcagatggcggtggtg
cccagagcacagatgtatccccagcagcagcccgagatgttctacccagagaccagacct
ccaccgtcaggctctcagtacgacggccctccataccaaacaggcaacccctacccctac
caagcccctccgtatgtccagaggtacatacgaaacccgccgcctcccaacgagtcctct
gtgcccccctatcaggagtcgtaccccagctatgttcccgagcgacagtaccctgcccat
tcggggcctgccttctcccaagggttcccacctcagccccactacgacagccgccgacac
acaccctaccctggacacccccctccccagtcctatgcccctccccgggatgagatcagg
atgagccccgtgcccgtggatgtgccccctgcacccatgcccccaccccctgcgggtgct
gctggttccctctaccaccctgaccctcgggaaagatatccaccggaggggtaccctccc
catggaccccatcccggccatatgaggccctatgtgagggacccttatagccgctcccag
cccagcctagactacttacaccgccgacgcaaagagatcatggctcagctggaggagagg
aaggtcatctctcccccgccctttgcagcctcccccacacttccccacaactttcctaac
gactacccacaggagtatcttgaagagagctccaaagcctttggaaagggccgtgagcaa
gactacgcagggcagtattcgccctggtcgtgtgacaccataggatcctacatcggcagc
aaggatgccaagtctaaagacctcatgggtggcgtggagatgatgaatgtggaagggaaa
ggtctgcgagaccctcccctggaagctcagcggcgctccgcagacgccaaagacgacgat
cccatcatcccctttggctcgttgcccaccgtctcacgctttggcgcaatttcacgcacc
tctaaaacgggctaccagaccactggccccgtgcaagccatggcatcatcacaaggatcg
ggacccaagcacatgaccacagcagcggagtactcctacgggaaccaccctgcctggggt
ggagcatcctaccctcaacaacaccagaacatgaccgctcagggacacttcagtgaacgc
ctgcccatgccccctcctgacagagaccagctgaagatggagctgcaacaggtcaaccag
cagatcagtcagcagacacaggctgccagtaactctctgctcttgcagagggaggccagc
gccatggctgctcagcctgcgggaggcaagtggccagcaggaggcgccgtgtccagtgag
cagctcagtctggagctctgccatgtggagcgagagattggcaagaggacccgagagatg
gccatggagaatcaggtggctcacgagtacaaaatgaaggccagtgagaatggccaggca
gagcgtaaagcccagctggatgagctgtcccttgccctgggtgaggtttcaaatggatcc
agcagcattgtgtcggaggccagcgccaccatgctgtccctgagcagtaaaacatcatcg
ctcagtctgtgctcggctgaccccaccccagccagcggtgcagaccaccagaagaacggt
gtggtccactcctgctcgtag
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