Sardina pilchardus (sardine): 134062354
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Entry
134062354 CDS
T10667
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spil03016
]
134062354 (rtcb)
Enzymes [BR:
spil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
134062354 (rtcb)
Transfer RNA biogenesis [BR:
spil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
134062354 (rtcb)
Prokaryotic type
tRNA splicing ligases
134062354 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
134062354
NCBI-ProteinID:
XP_062374323
LinkDB
All DBs
Position
17:complement(24669095..24674357)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLHTNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMSNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIGS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcatacaatgacgaactacagtatctggacaaattacatacaaattgttgg
aggatcaagaaaggattcgttcccaacatgcaggtcgaaggagttttctacgttaatgac
ccacttgaaaaattgatgtttgaagagttgagaaatgcttgccgaggtggaggtgttgga
ggtttccttccagccatgaaacaaatcggtaacgtggcagccctccctggaatagtgcat
aagtccattggtctcccagatgtccactcaggctatggctttgccattggcaacatggca
gcttttgacatgagtaatcccgatgcagtggtctctccaggcggggtgggcttcgacatc
aactgtggtgtgcgtctgctgcgaaccaacctagacgagggagacgtgcagccggtgaag
gagcagctggcacaggccatgtttgaccacatccccgtcggtgtgggctccaagggagtc
atcccgatgagtgcaaaggatttggaggaggctctggagatgggagtggactggtccctg
agggagggctacgcctgggcagaggacaaggagcactgtgaggagtacggcaggatgctg
caggccgacccaaacaaggtgtcgtccaaggccaagaagagaggcctacctcagctgggg
actttgggagctggcaaccactatgccgagatccaggtcgtggatgaaatctacaatgac
tatgctgccaaaaaaatgggcatcgaccacaagggccaagtgtgtgtgatgattcacagt
ggcagcagagggcttggtcaccaagtggctacagatgccctggtggccatggagaaggcg
atgaagagggataaaatcattgtaaatgaccgtcagctggcctgcgcccgcattggctca
caagagggccaggactatctgaagggcatggctgcagctggcaactatgcttgggtcaac
cggtcctccatgactttcctcaccagacaggccttctccaaagtcttcacgaccacacca
gatgatctggacatgcacgtgatctatgacgtgtcccacaacattgccaaggtggaggag
cacatggtggacggcaagcagaagactctgctggtccatcggaagggctccacccgtgcc
ttcccaccacaccaccctctcattgctgttgactaccagttgactggccagcctgtcctg
attggtggcaccatgggaacgtgcagctatgtcctgaccggaacggagcaaggcatgacc
gagacatttgggaccacatgccatggagcgggtcgtgctctatcccgtgccaaatcccgc
agaaatctggacttccaggatgttctggataagttggcggacaaaggcatcgccatccga
gtggcctcacctaaactagtcatggaagaggctcctgaatcctataagaatgtaacggat
gtcgtcaacacgtgtcatgaggctggtatcagcaagaaggccatcaaacttcgtcccatt
gccgtcatcaagggttaa
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