Sardina pilchardus (sardine): 134064380
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Entry
134064380 CDS
T10667
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spil00536
]
134064380 (col13a1)
Glycosaminoglycan binding proteins [BR:
spil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134064380 (col13a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134064380
NCBI-ProteinID:
XP_062376283
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Position
18:2829357..2963615
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AA seq
600 aa
AA seq
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MEEDQKWKVSPPSVAERTCSEHPCKKRFGGNCRDLSGLTVCVALTLMCLGFCTLIFLRTS
ELQSRIVSLESQRDAQLSGWIALEQVEPVILSRLDQILEEKLAARLPKIREARDAPHDCI
CPPGPPGQPGTRGFPGFPGPIGLDGKPGHNGLKGDTGPRGPKGLPGEPGPKGEKGLCGEY
SHRKRRIVHSCAGGQASQGEPGPPGPPGPPGVPGLNGPSGPPGKPGEPGKPGKDSKMLPG
LKGEPGVPGLKGDRGNVGPLGPEGPKGLKGDIGEKGDKGDKGEASAAGSGIKGEPGTPGT
PGNPGLPGPAGLKGDKGEQGIKGDVGAAGAEGPAGPRGPQGPAGEPGKAEINNNENDIRN
VPLMGPPGLPGPPGTPGSNGMKGDIGLPGPPGHDGEKGPRGKPGEQGPAGPLGPEGPRGE
GGVMGYPGPKGDKGDMGLSGSPGLDGPTGEKGAAGPPGPIGLPGAMGQKGDAGDKGGVPD
MVYGPPGPPGAQGPVGPMGPQGHSGPKGEPGIGMRGEKGATGLKGDKGDRGHLGLPGAHG
LDGKPGPVGLIGPAGASGPAGPKGEMGDKGDTGVAGPIGPQGIPGLVGPPGLKGTRSPLL
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggatcaaaagtggaaagtttcgcctccgtccgtcgcggagaggacttgtagc
gagcatccttgcaaaaagcgctttggggggaattgccgggacctgtccggtcttacggtt
tgcgtcgcgctgactttgatgtgtttgggattttgcactttgatttttctgaggacgtcg
gaactacagtcccggatcgtcagtctggagagccaaagagacgcgcagctatcgggctgg
atcgcgctggaacaggtggagcccgttattctcagtcgactggatcagattctggaggag
aagctcgctgcgcgcttgcccaagatccgagaagccagagacgccccacatgactgcatc
tgcccaccaggacctccaggacagccaggaacaagaggattcccaggttttccgggtccg
atcggtcttgacgggaaaccaggccacaacggactcaagggcgacacgggtccgcgcggt
ccaaagggattgccgggtgaacctggacccaaaggagaaaagggtttatgtggcgagtat
tctcaccggaagcgtcgcatcgtccacagctgtgcaggaggacaggccagtcagggagaa
ccaggccctccaggccctcccggccctcctggtgtcccaggactcaacggacccagcggc
cctccgggcaaaccgggtgagcctggcaaaccagggaaggactcgaagatgctgccagga
ctgaagggggagccaggagtaccagggctaaagggtgaccgtggcaacgtcggcccactg
ggacctgaaggccctaaaggtctgaagggtgacataggagagaagggtgataagggagat
aaaggagaagccagcgcagcaggaagcggaatcaaaggagaaccaggaactccaggaaca
ccaggaaacccgggcctcccaggtccagcaggactcaagggtgataaaggcgagcaggga
atcaagggcgacgtaggggcagcaggagcagaaggacctgctggaccaaggggaccccaa
ggacctgctggagagccaggcaaagctgaaatcaacaacaatgaaaatgatatccgaaat
gttccgcttatgggtcctcctggtttaccgggccctccagggactccaggcagtaatggg
atgaagggtgatatcggattaccaggacctccaggacatgacggagagaagggtccgaga
gggaagccaggagagcagggtccagcagggcccctcggcccagagggcccccgcggagaa
gggggggtgatgggatatcctggacccaaaggggacaagggggacatgggcctgtcaggg
tcacccggattagacggccctacgggagaaaagggggcagctggacccccaggtcccatt
ggactgccaggcgcaatgggccagaaaggagatgctggagacaaaggaggagttcctgat
atggtctatgggcccccaggacctccaggggcacaagggccagttggccccatggggcct
cagggccactctgggccgaagggcgagccgggcattggtatgcgtggggagaagggagcc
acaggcctgaagggagacaaaggcgacaggggtcatctaggactgcctggggctcacggg
ttagatggcaagcctggtccagtgggcctgatagggccagcaggggcctctgggccagca
ggaccaaagggagaaatgggagataaaggagacacaggagtggctggaccaatcgggcct
caaggcatccctggtttagttggaccacctgggctgaaaggcacacggtctcccctcctc
tga
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