Sardina pilchardus (sardine): 134064565
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Entry
134064565 CDS
T10667
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134064565 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134064565 (fip1l1b)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
134064565 (fip1l1b)
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Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
134064565
NCBI-ProteinID:
XP_062376464
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All DBs
Position
2:15744897..15753984
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AA seq
567 aa
AA seq
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MSAEEADKTTTDASAGDEEEEWLYGDESENKDNEEEEAKLTAAVSAAPPAPVTEEATGNG
VTSQKETPADDEDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGATPVNLNIKTAGSRPYG
AASAKLKGVDLEAPGNINGVPVLEVEMETFEEKPWRKPGADLSDYFNYGFNEDTWKAYCE
KQKRLRMGLDVMNISSTTSKITVQQGRTGNTEKEVVNLTPHTIKPDFNSPTNIYNKPGIN
PTRISPPQWTGPTNQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNQEGNNIQVISEHS
SSDAEPTPAKMPPFFPPGPLPPNIPPPPFLPPPPNVSTAPPLIPPPRIPITVPPPGFPPP
PGGPPPSLMPTMDNSGHPGGYDGRSVPPYPFPGGGYPPPMPGAVAQWPTMMDNSKQWDYY
PRREKEREKERERERPRERAHEREREREREHSPSAMGYNRCTESAVSHMESSNDEERYRY
REYPERAYERHRERASREKEERHRERRHRDKEERAHKSSRSSSRRRHDSEEGDSHRRHKH
KKSKRSKEGKEPSEERAGDQENQEAME
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaggcggataaaaccacgactgatgctagcgcgggtgacgaggaagaa
gaatggctatatggagatgagagtgaaaataaagacaatgaagaggaagaagccaaattg
acagcagcagtaagtgctgctccacctgcccctgtcacagaggaggccactggcaatgga
gtgaccagtcagaaagaaacgcctgcagatgatgaggacagtgacagtgatagtgatgat
gacgatgatgacgttcgagtcaccattggtgacattaagactggagctccgcagtacacg
acctatggagccacaccagttaacctaaacataaagacggcgggtagcagaccctatggg
gcagcctctgccaagcttaagggagtggacctggaggcccctggtaacatcaatggcgtc
ccggtactggaggttgaaatggagacctttgaggaaaaaccctggagaaaaccaggtgct
gacctttctgactactttaactatggcttcaacgaggatacttggaaagcctattgtgag
aaacagaagagacttcgtatgggattggatgtcatgaacatttcctccactaccagcaaa
atcacagtgcagcagggacgaacaggaaacactgaaaaggaagtggtgaacctcactccc
cacacaatcaagccagacttcaattccccaacaaacatatacaacaaacctggaataaac
cccaccaggatatcccctccgcagtggacaggccctaccaatcaggacatgtcctattat
acgaaaacaagtggcacgattgatgtcattgggggagggactgcaaccattagtcgggtt
gagggacgacgtcgccacaatcaagaagggaacaatatccaggtcatctcggaacactcc
tcctcggacgctgagccaacaccggccaagatgccccccttcttcccaccaggacccctg
cctcccaacatcccgcctcccccgttcctgcctcctccgcccaacgtcagcaccgcccct
ccgctcatcccgccgccaagaattcccatcactgttcctcctcctggtttccctcctccg
cctggtggccctcctccatccctcatgcccacaatggacaacagtgggcatcctggtgga
tacgatggacgttcagtccctccttaccctttccctggaggtggctatccgcctcccatg
ccgggggcagttgctcagtggcccaccatgatggacaactccaaacagtgggactactac
ccccggcgggagaaggagcgtgaaaaggagagggaacgcgagcggccacgagagcgagcc
cacgaaagggagagagagcgggagcgagaacacagcccttcagccatgggttacaacagg
tgcactgaaagcgccgtcagtcacatggagagtagcaatgacgaagaacggtatcggtac
cgtgaataccctgagcgtgcctacgagcgacaccgcgagcgagccagccgagagaaagag
gagcgacaccgggagaggagacaccgagacaaagaggagagggcacacaagtcctccagg
agcagcagcaggaggcggcatgacagtgaggagggggacagccaccgccggcacaagcac
aagaagtccaagcgcagcaaagagggcaaggagcccagcgaggagcgagctggagatcag
gagaaccaggaggccatggagtaa
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