KEGG   Sardina pilchardus (sardine): 134065915
Entry
134065915         CDS       T10667                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134065915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:spil03041]
    134065915
Spliceosome [BR:spil03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    134065915
 Complex C
   U5 SnRNP specific factors
    134065915
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 WD40_like Beta-prop_IFT140_2nd Beta-prop_Nup120_160 PQQ_2
Other DBs
NCBI-GeneID: 134065915
NCBI-ProteinID: XP_062377020
LinkDB
Position
19:complement(26711441..26714319)
AA seq 347 aa
MIEPKKRAADMAVVPTAVKRPRNELVAAVQSQQLMPTGPPRCSSLEAPIMLLSGHDGEIY
GCKFHPNGATLASAGYDRLILMWNVYGECENYATLKGHSGAVMELQYNTDGSLLFSASTD
KTVCVWDAETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAPVHTF
QNTYQVLSVTFNDTSDQIMSGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLCLSAEGSYL
LSNSMDNTVRVWDVRPFAPKERCVKVFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY
VWDTTSRRILYKLPGHAGSVNEVSFHPEESIVLSCSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaacccaagaaacgcgctgccgatatggcagtggtcccaaccgctgtgaagagg
ccgcgcaacgagcttgtagctgccgttcagtcccaacaactcatgcctacgggacccccg
cgctgctccagcctcgaagccccgattatgctgctctccgggcatgacggggagatctac
ggctgcaaatttcaccccaatggagccacattagcctcggctggctatgaccgcctcatc
ttgatgtggaacgtgtatggagagtgcgaaaattacgcgacgctaaagggacacagtgga
gcagttatggaacttcagtacaacacagacgggagcctgctgttctccgccagcaccgat
aagacggtgtgtgtctgggacgcagagacaggtgaacgtgtgaaacgtctgaaaggccat
acctccttcgttaactcgtgttaccctgcgcgccgtggccctcagctggtgtgcacgggc
agcgacgatggcaccgtcaagttgtgggacatccgaaagaaggcacccgttcacactttt
cagaacacctaccaggtgctcagcgtcaccttcaacgacaccagcgaccagatcatgtcc
ggaggcattgataatgacattaaggtttgggacctgagacaaaataagttgatatacagt
atgcaaggtcacggggactctgtgacaggactctgtcttagcgcagagggatcctacctg
ctctccaactccatggacaacaccgtgcgcgtatgggatgtccggccatttgctccgaag
gagaggtgtgtgaaggtcttccaggggaatgttcacaactttgaaaagaaccttctgcgt
tgctcctggtctccggatggcagtaagattgctgctggatccgctgacaggtttgtgtat
gtctgggacaccacgtcccgcaggattctctacaaacttccgggtcatgctggatcagtc
aacgaggtcagctttcaccctgaggagtctattgtgctgtcttgctccagtgacaaacga
ctgtacatgggagagatccagtga

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