Sardina pilchardus (sardine): 134065936
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Entry
134065936 CDS
T10667
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134065936 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134065936 (ndc1)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134065936 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
134065936
NCBI-ProteinID:
XP_062377050
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Position
2:20667933..20676730
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AA seq
679 aa
AA seq
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MFSLKHSCWFIRKVVCWRAIASIAWSVLLLPVTTTLFVFLSRFSLLHPIQWISDSLALLT
ASSTIFSLVLLSGVVLVIGFFNLESYTVVPSIPCTRIALLGKVLHPRQCIHSVVHAAVGM
LVSWCAAITIGGRYRTLSSPCLPSESEDTGQMCLNEYHLLLLLSGAFMGYSHSLLGVVNN
MNYVSFPAIQQYKYLRFKGSLSLVVKCSAVQSMYALRNYLALYFFFGYAPKTWICRTLNL
QEDGSLHALDTVAGLLDFALLYHLWIAGTFLLLTWYITVLLFRIYVSEMHSFPVQPTFAE
EVEECLPKVLLCKEPAIIKFLALQDLALLSQHSAVRRLEVFSLSQPGGHPHNWNAISKEC
LSLLTELTQRLVAHHDAVASNGRVKSQSSSSSETKSGSWGSVSSGTTDLPKTPLPSHILK
TPGSVFLRSSVGTLHSPLTAPFTPDLDSPFSSPSIRRLTAPQEPNSPWFGTVQSPHVMRR
GPKLWSASTDSQSNGSTTASPAPAAAAAPGPSSPPADHKPSFLAQWLQNRKEQVKGFMAK
RVLVMYLFNKLPEATSQALFADSQAHIWALEGLSHLVVASYSEDRFGVVQTTLSSILSTM
LVLQEAVDRHFKLPHASSKPLRSTCSMGESTYKTLRFAMRAALKTAIYRITNTFGEHLHA
VQMSTDHRKRLQQFLEYKE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgttttctttaaaacacagttgttggtttattcgtaaggtggtatgttggagagctatt
gctagcattgcttggtctgtgctgctgttgccagtcaccacaacgctgtttgtgttcttg
agtagattcagtttactccatccaattcagtggatatcggattcacttgctcttctgact
gcttcaagtaccatcttctctcttgtgctactctctggagtggtgttggtgattggtttt
ttcaacctcgaatcttacacagttgtcccttccatcccttgcacaaggattgctcttttg
gggaaggtgctccaccctcggcaatgcatacactctgttgtgcacgcagcggtggggatg
cttgtgtcttggtgtgccgctatcaccatcgggggcaggtaccgcaccttgagttccccc
tgccttccgtctgagagtgaagatactggccagatgtgtctgaatgagtaccatctgctc
ctgttgctgtccggagccttcatgggatacagccacagtctccttggtgttgtgaacaac
atgaattatgtgtctttccctgccatacagcaatataaatatctgcgctttaaaggctct
ctgtctcttgtggtgaaatgcagtgctgtgcaatccatgtatgcactgaggaattactta
gctctgtacttcttttttggatatgcacctaaaacgtggatctgcagaactctcaatcta
caggaagatgggtctctccatgctctggacactgtcgctggactgctggactttgctttg
ctgtaccatctgtggatcgctgggacattcctgctgctaacctggtacatcacagtcctg
ctcttcaggatttatgtgtcagagatgcacagttttccagtccagcctacatttgcggag
gaagttgaggaatgtcttcccaaagtcttactctgcaaggagccagccatcattaagttc
ttagccttgcaggacctggctcttctgtcccagcattcggccgtgagaaggctggaggtg
ttcagtctcagtcagccaggtggccaccctcacaactggaatgccatcagtaaggagtgc
ctgtccctgctgacggagctgactcagaggctggtggctcaccatgatgcagtggcctcc
aacggccgcgtcaagtcccagtccagcagcagctccgagaccaagtctggatcgtggggc
tcagtgtcatcggggaccacggacctgccgaagacgcctcttcccagccacatcctgaag
accccgggctccgtgttcctgcgctcctctgtggggacactgcacagccccctgaccgcc
cccttcactcccgacctggacagccccttctcctccccctccatccgccgtctgaccgcg
ccccaggagcccaactcaccctggttcggcaccgtgcagagcccccacgtcatgaggagg
gggcccaagctgtggagcgcctcaacagattctcagagtaatggcagcaccactgccagc
cctgctcctgctgctgctgctgctcctggccccagttcccctccagccgatcacaaaccc
agtttcctcgcccagtggcttcagaaccgcaaggaacaggtgaaaggtttcatggcaaag
agggtgctggttatgtatttatttaacaagcttccagaggcaaccagccaagctttgttt
gctgacagccaagctcacatttgggctttagaagggttgtcccaccttgtggtggcgtcc
tattcagaggatcgctttggggttgtgcagactacactatcaagtattctcagcaccatg
ctggtgctgcaagaggcagtggacagacacttcaagctgccccacgcatccagcaagcct
ttgaggtccacctgcagcatgggagagtccacctacaagaccctgcgctttgctatgagg
gcggcactcaaaaccgccatatacaggataaccaacacctttggggagcacttacatgct
gtgcagatgtccactgatcacagaaaaagactgcagcagttcctcgagtacaaagaataa
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