Sardina pilchardus (sardine): 134068193
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Entry
134068193 CDS
T10667
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
spil Sardina pilchardus (sardine)
Brite
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
134068193 (dicer1)
microRNA pathway
RISC loading complex
134068193 (dicer1)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134068193
NCBI-ProteinID:
XP_062379752
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Position
20:22285197..22320164
Genome browser
AA seq
2005 aa
AA seq
DB search
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGDYRENGKRTVFLVNAALSVVQQAATVRTHSDLRVGEYTEESTS
WTSERWSQEILENQVLVMPCHIFLHALQAGVLPLSKINLVVFDECHLAITDHPYREIMRV
CDGFPCCPRILGLTASILNGKCDPGDLEEKILNLERILKSNAETATDLVVLDRYASQPRE
VVLDCGPFEDKSGLSKRLLTELEEALHFLNDCNLSAQREDRDPTFISKQVLTDCRAVLMV
LGPWCADKAAGIMVRELQKYIKHEQEELSRKFLLFTDTILRKVHALCEEHFSPASLDLRF
VTPKVIKLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKEKPEA
NFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNK
QMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR
ARAPLSNYIMLADSERTRAFEEDLKTYKAIEKILRNKCSKSAEVGEFEEPVPDDDNILPP
YVLRSEDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCKTAELRDGLYQSTLYLPINS
PLREPVKGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEE
TSVPGRPGSTKRRQCYPKAIPECLRDSYPLPEQPCYLYVIGMVLTTPLPDELNFRRRKLY
PPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQRSGFLLSPAQLELITRLHQYI
FSHILRLEKPALEFKPTEADAAYCVLPLNVVEDSNTLDLDFKFMEDIEKSEARIGIPNTQ
YTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFEEYYK
TKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQIL
VPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTATDAGVGAQNLPPDFRYPN
LDFGWKKSIDSKAFISCPEHSGDHCKHGSPSPSPSPSPTPSDPAEEPPSPEERPLPHENC
NAPDEKLEPPSPSESDALPAPQLQSPQEGRDDVVNDDDDGGGRRDCVCSGNLLNGTGPET
LEAAAAGAAEAEAALLCQCSAPDLPLPRGEAAQTTTSVPVQSPPPSSGEHQAQPPPLASH
ECNPDGTPHPCHGLVKQKKMKKPTSDCCPAVAITIATTETTVVTAATTPTPSPTLTPGSP
APSLTPTSTTVAVVESPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTY
LFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQD
KSSTDKWDSDETKEDLANGRSGMEDEDDYDDDEDDEEEVAEVTMGGGGGGVGGLGGGGVG
GGGEGDANPPWKEVKDGNVSGEEEELEYDQEHIRFIDSMLMGSGAFGKISLGTFPPADPC
PQWRPPRKSPLLTSTHASGDAGGGGGGGGGGGGGGIGGGGAEEFDYSSWDAMCYLDPSKA
AEEDDFVVGFWNPSEESCGGELGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGER
AAQMFLCSLGLKVLPDAKAGEQVVARAGGHGNGQGGPGEPQYGWLQIPPRCMFDHPDAER
TLVHLISGFENFEAKINYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLIT
KHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQL
EKDEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSMMSLETVWRVYYPM
MRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSY
RIAKSAAARRALRSLKANQPQVQTS
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggctggactacagctggtgacccccgcatcgtcccccatggggcctttcttcggtctc
ccatggcaacaggaagctatccatgacaacatttatacaccaaggaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactattgtctgcttaaatactggctcagggaag
acctttattgcagtgctcctcacaaaagagctctcccaccagattcggggagattaccgg
gagaacggcaagaggaccgtttttctggtcaatgcagcgttgtctgtggttcagcaagca
gctactgtccggacacattcggacctccgagtcggagagtacactgaggaaagtacttcc
tggacatcggagagatggagccaagaaattctcgaaaatcaggtgctcgttatgccttgc
cacatcttcctccacgcgctccaggccggcgtgctgccgctgtccaaaatcaacctggtg
gtgtttgacgagtgccatctagccatcacggaccatccctaccgagagataatgagggtt
tgtgatggcttcccctgctgccctcggatcctcgggctgaccgcctccatcctgaacggg
aagtgtgaccctggcgacctggaggagaagatcctcaacctggagaggatcctgaagagc
aacgcagaaactgccacagacctggtcgtcttggaccgatatgcttcccagccccgggag
gtggtcctggactgcgggccattcgaggacaagagcggcctgtccaagcgtctcctgacg
gagttggaagaggccctgcacttcctcaacgactgtaacctgtctgcacagcgggaagac
cgcgaccccaccttcatctccaagcaggtgctgacggactgccgggcggtgctgatggtg
ctcgggccgtggtgcgcggacaaggcggcgggcatcatggtgcgcgagctccagaagtac
atcaagcacgagcaggaggagctcagccgcaagttcctgctgttcaccgacaccatcctg
cgcaaggtgcacgcgctctgcgaggagcacttctcgccggcgtcgctcgacctccgcttc
gtcacgcccaaggtcatcaagctgctggagatcctgcacgagtacaagcccttcgagagg
cagcagttcgagagcgtcgagtggtacaacaaccgcaaccaggacaactacgtgtcctgg
agcgactcggaggacgaagacgaggacgaggaggtcgaggccaaggagaagcccgaggcc
aacttcccctcgccgttcaccaacatcctgtgcgggatcatctttgtggagaggcgctac
acagctgtagtgctcaaccggctcatcaaagaggcagggaagcaggaccccgagctggcc
tacatcagcagcaacttcatcacgggccacagcatcggcaagaaccagccgcgcaacaaa
cagatggaggtggagttcaggaaacaggaggaggtgctccgtaaattccgcgcacacgag
accaacctgctcattgcgaccagcatcgtggaggaaggcgtcgacatcccaaagtgcaat
ttggtggtccggttcgacctgccgacggagtaccggtcgtacgtgcagtccaagggccgc
gcgcgcgctcccctctccaactacatcatgctcgcagacagcgagcgcacgagagccttc
gaggaggatctcaaaacctacaaagctatagaaaagatccttaggaacaagtgctcaaag
tcagccgaggtgggcgagtttgaggagcctgtaccggacgacgacaacattctgcctcct
tacgtcctccggtcagaagacggaggcccgagagttacaatcaacactgcgatcggacac
gtcaacagatactgtgcaagactccccagcgaccccttcacccatctggcccccaagtgc
aagacggcagagctgagggacggactctaccagtccaccctctacctgccaatcaactcg
cccctcagggagccagtgaaggggcctgtgatgaactgtgcaagacttgctgagaaagcg
gttgcccttctttgttgtgaaaagctgcacaaaatcggggagctggatgaccacctgatg
cccgtaggcaaggagacggtgaagtacgaggaggagctggacctgcacgacgaggaggag
accagtgtgcctggccggccggggtcaaccaagaggaggcagtgctaccccaaagccata
ccggagtgtcttcgggacagctacccgctccctgagcagccgtgctacctgtacgtgatc
ggcatggtgctcaccaccccgctgcccgacgagctcaacttcaggcgcaggaagctctac
cccccagaggacaccacgcgctgctttggcatcctgaccgccaagcccatacctcggatc
ccgcacttcccggtgtacacgcggtccggcgaggtgaccatctccatcgagctgcagcgt
tccggcttcctgctgtctccggcccagctggagctgatcacgcgcctgcaccagtacatc
ttctcccacatcctgcggctggagaagcccgcgctcgagttcaagcccaccgaggccgac
gccgcctactgcgtgctgccgctcaacgtcgtcgaggattccaacactctggatttggac
ttcaagttcatggaagacattgaaaaatcggaagcccgtattggcatcccaaacacccag
tacaccaagcagaacccttttacctttaaactggaggattaccaggatgcagtcatcatt
ccaaggtatcgtaatttcgaccagcctcaccgcttctacgtggcggatgtctacacggac
cttaccccgctcagtaaattcccgtcgccggaatacgagaccttcgaggaatactacaaa
accaagtacaacctggacctgtccaatctcaaccagcccctgctggacgtggaccacacg
tcctcaaggttgaacctgttaactcctcggcatctgaaccagaagggaaaagccctgccc
ctgagcagtgcagagaagaggaaggccaagtgggaaagcctacaaaataaacagatcctg
gttcctgagctgtgtgccatccacccgatccctgcctccctgtggaggaaggcggtgtgc
ctacccagcattctctaccgcctgcactgcctgctcaccgccgaagagctgcgatctcaa
actgccacggacgccggcgtcggggcccagaacttaccccctgacttcaggtatcccaat
ctggatttcgggtggaagaagtccatagacagcaaggccttcatttcctgccccgagcac
agcggcgatcactgtaagcacggatcgccgtcgccgtcgccatcgccatcgccgacgccc
tctgaccccgcagaagagccccccagtcccgaggagcgccccctaccacacgagaactgc
aacgcaccagacgaaaagctagagccgccctcgccttccgagtcggacgcgctaccggca
ccgcagcttcagtcgccacaggaaggccgagacgacgtcgtcaacgacgacgacgacggc
ggcggccgtcgagactgcgtgtgctccgggaacctccttaacggcaccgggccggagacc
ctggaggcggcggcggcgggagcggcggaggcggaggcggcactgctgtgccagtgctcc
gcgcccgacctgccactgccacgcggcgaggcggcgcagaccactacctcagttcctgtg
cagtcccctcccccgagcagcggcgagcaccaggcccagcctccacccctggccagccat
gaatgtaaccccgacgggaccccgcacccctgccatggactcgtgaagcagaagaagatg
aagaaacctacctcagactgttgccccgctgtcgccatcaccatcgccaccaccgagacc
accgtcgtcaccgcagcaacgaccccgaccccgtccccgaccctgacccccggctctcca
gcaccttcgctgacccccacttccaccacagtggcggtggtggagtctccgaagacgctg
ggccccaacccgggcctcatcctccaggcgctcacgctctccaacgccagcgacggcttc
aacctggagcggctggagatgctgggcgactccttcctcaagcacgccatcaccacctac
ctgttctgcacctaccctgacgcccacgagggacgcctctcctacatgcgcagcaagaag
gtcagcaactgtaacctgtatcggctgggcaagaagaaaggcctgcccagccgcatggtg
gtgtccatcttcgacccaccggtcaactggctgccccctggatacgtggtcaaccaggac
aagagcagcacggacaagtgggactcggacgagaccaaggaggacttggcaaacgggcga
agcggcatggaggacgaagacgactacgatgacgacgaggacgatgaagaggaggtggcg
gaggtgaccatgggcggcggtggtggtggtgtcggcggccttggcggcggaggagtcgga
ggaggaggagaaggagacgcgaacccgccctggaaggaggtgaaggacggcaacgtgagc
ggcgaggaggaggagctggagtacgaccaggagcacatccgcttcatcgacagcatgctc
atgggctcgggcgcgttcggcaagatctcgctcggcaccttcccgccggccgacccctgc
ccccagtggcgccccccccgcaagtccccgctcctgaccagcacgcacgcctccggggac
gctggcggtggtggcggcggcggcggtggcggtggtggcgggggtatcggcggcggcggc
gcggaggagttcgactacagctcctgggacgccatgtgctacctggaccccagcaaggcg
gcggaggaggacgacttcgtggtgggcttctggaacccgtcggaggagagctgcggcggc
gagctgggcaagcagtccatctcgtacgacctgcacaccgagcagtgcatcgccgacaag
agcatcgccgactgcgtggaggcgctgctgggctgctacctgaccagctgcggcgagcgc
gccgcccagatgttcctctgctcgctcggactcaaggtgctgcccgacgccaaggccggc
gagcaggtcgtggcccgcgccggcggtcacggtaacgggcagggcggccccggcgagcca
cagtacggctggctgcagatcccgccgcgctgcatgttcgatcacccggacgctgagcgc
acgctcgtacacctcatctctggctttgagaacttcgaggccaagatcaactacacgttt
cagaacaaggcctacctgctgcaggccttcacccacgcctcctatcattacaacactatc
acagattgttaccagcgattggagttcctcggtgatgcaattttagactacctcataacg
aagcacctttatgaagacccacggcagcattcgcccggcgtgctgacggacctgcgctcg
gccctggtcaacaacaccatcttcgcctccctggccgtcaagtacgactaccacaagtac
ttcaaggccgtctcgcccgagctcttccacgtcatcgatgactttgtgcaatttcagctg
gagaaggatgagatgcaaggcatggactctgagctgcgccgctccgaggaagacgaggag
aaggaggaggacatcgaggtccccaaggccatgggggacatctttgagtcgctcgccggc
gccatctacatggatagcatgatgtccctggagactgtttggcgagtgtattatccaatg
atgcggccacttatagagaaattttctgccaatgttcctcgttctccggtgcgtgagttg
ctggaaatggagccagagacggctaagttcagccctgcggagcgcacctatgacgggaag
gtgcgcgtgacggtggaggtggtggggaagggcaagttcaagggcgtgggccgcagctac
cgaatcgccaaatccgccgccgctcgccgggccctacggagtctcaaagccaatcaacct
caggtccagaccagctga
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