Sardina pilchardus (sardine): 134068461
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Entry
134068461 CDS
T10667
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
134068461 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
spil01009
]
134068461 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
spil04515
]
134068461 (pcdh11)
Protein phosphatases and associated proteins [BR:
spil01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134068461 (pcdh11)
Cell adhesion molecules [BR:
spil04515
]
Cadherins
Protocadherins
134068461 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
RibLong
DUF6249
Motif
Other DBs
NCBI-GeneID:
134068461
NCBI-ProteinID:
XP_062380078
LinkDB
All DBs
Position
21:complement(24920447..25047995)
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AA seq
1227 aa
AA seq
DB search
MDLASEAHALLLLLSCLVSLCWAQEKEYTVKEEQPENVRIGNLRKDLDLALDPNIKLSSP
LQFKPVYKTGDVQLVRVEANTGEIFTTANRIDREKLCSGIFGEKQCFYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINNRYAVPSAYDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQSLDREVKDTFVMKIKVEDGGTPPKSSTAILQVTVS
DVNDNRPVFKDSEVEVSVPENAPSGTSVTQLHATDADLGANAQIHFSFSNQISPATRRHF
AIDSNTGLITVKQPLDREVTPVHKLIVLASDGSATPSRATVTVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLNGKVTCYTDPDVPFRLKPVFNNQFLLET
AAPLDYETTREYAIKIVASDSGNPHLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKVSATDADSGQNAEIIYTLGPDAPDGFSIDRRSGILSVNKRLDREKHEKYTFTV
IARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVVNLSILNAKDNFIIDPKTGVIKPNITFDREQQSSYTFMVKAVDMGQKPTTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVPSSTSPGSVVTRVFAIDNDTGMNAELQYHIIGGSQ
KVFSIDRTTGNITLQEKITAGDLGLHRLVVQVRDLGQPESLHAIALVHLFVNETVSNATY
IQEQLRKSMETPLDRTVGESEVTQQAYGYVIVVIGIIAGTMTVILVIFVTALVRCRQTPR
HKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVTIEESKPDDPTHEHINGK
LDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVAPKKHHVI
QELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGSFKTPGQIHTRQNQSSTPDKTFTA
VPQACPHKTQRRVTFHLPDGSQESCSDSGLGDHDPASSASTTQPLPLGFPQEEYYEQTSP
NSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSDSCWMPPALTQFQTSTSTT
LPSFGFQQTWAQGAMPDGRHTLCRSVPKDDLDKGSNRPQFYNTLERHSSKKEDPVKVIPL
ASFSSSPSGQQTPANMGSSGFLHEHQL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggacttggcaagtgaggcccatgctctgctgctgttgctgagctgcctggtctcgctt
tgctgggcccaggagaaggagtacaccgtgaaggaggagcagccggagaacgtgcgcatc
gggaaccttcgcaaggacctggacctggcgctcgaccccaacatcaagctctcgtcgccg
ctgcagttcaagcccgtgtacaagacgggcgacgtgcagctggtgcgggtggaggccaac
accggggagattttcaccacggccaaccgcatcgaccgcgagaagctctgctcgggcatc
ttcggcgagaagcagtgcttctacgagatcgaggtggccgtgctgcccgacgagatcttc
cggctggtcaagatccgctttctaatcgaggacatcaatgataacgcgccccttttccag
tccacggtcataaacatttccatcccggagaacacagcgatcaacaaccgctacgctgtg
ccctctgcctatgacccagatgtggggatcaatggcatccagcactatgaacttgtcaag
agtgtcagtgagtttggcctggacatcatcgagaccccagagggagacaagtggcctcag
ctcatcgtgcagcagagcctggaccgggaggtcaaggacacctttgtgatgaagatcaaa
gtggaggacgggggcaccccaccaaagtccagcaccgccatcctgcaggtcaccgtgtcg
gacgtcaacgacaatcggcccgtcttcaaagacagcgaggtggaggtcagcgtgccggag
aacgcgcccagcggcacatccgtcacccagctccacgccaccgacgcggacctcggcgcc
aacgcgcagatccacttctccttcagcaaccagatctcgcccgcgacccgccgacacttt
gctatcgacagcaacaccggattgattaccgtcaagcaacctctggaccgagaggtcacc
ccagttcacaagctgattgtgctggcgagcgacggcagtgccactccctcaagagctaca
gtcactgtgaatgtcactgacgttaatgacaacgtcccgtctatagacaccaggtatata
ataaaccttgtgaacggaactgttctcttgtccgaaaatgctccattaaacacaaagata
gctctgattacggtgaccgacaaagatgctgatctgaatgggaaagtgacgtgttacaca
gacccagatgtacctttcaggttaaagcctgtttttaacaaccaatttctgctcgagacc
gctgccccccttgattatgaaaccaccagagaatacgcaattaagatagtcgcctccgat
tcaggaaaccctcatctgaatacgtcagcaatggtgctcataaaaatcaaagatgagaac
gataatgcccccatcttccctcagcctgaaattcagctctccatccccgagaacaacgac
ccttccacccagttgataaaagtcagcgctactgatgcagatagcgggcagaatgctgag
atcatttacacgcttgggcctgacgcccctgatggatttagcatagatcggcgctccgga
attctctcggtgaacaaaaggctcgacagggagaagcacgagaagtacacattcacagtc
atcgcgcgggacaatggatccacctccctgcagagcaacgtcactgtgagactgatcgtc
caagatttaaatgacaacagcccggccttcactcaccccgagtacaacttctacgtgcct
gaaaacctcccgctgtacggcacggtgggattgatcacggtcactgatgcggacgcgggg
gacaatgccgtggtcaacctctccatcctcaacgctaaggacaatttcattatcgatccc
aaaaccggcgtcattaagcccaacatcacgtttgaccgggagcagcagagctcgtacacg
ttcatggtgaaagcggtggacatgggtcagaagccgaccacctcgtacgccaaggtcacc
atcaatgtcgtcgacgtgaacgacaaccggcccgtgtttgtcatcccttcctccaactac
tcctacgacctggtcccctcgagcaccagtcctggatccgtggtgaccagagtgtttgcc
atcgacaacgacacgggcatgaacgccgagctgcagtaccacatcatcgggggctcgcag
aaagttttttccatcgacagaaccactgggaatattacactgcaggagaagattactgca
ggcgacctgggcttacacagactagtggtgcaagtcagagatcttggccagccggaatcg
ctgcacgccattgccttagttcatctgtttgtgaacgagactgtgtccaacgccacctac
atccaggagcagctacgcaaaagcatggagaccccgctggatcgcaccgtgggcgagagc
gaggtgacgcaacaggcctacggctacgtcatcgtcgtgatcggcatcatcgccggcacg
atgacggtcatcttggtcatcttcgtcacggctctggtgcgctgtcggcagacgccgcgg
cacaaggtggtgcagaagggcaagcagagcggcgagtgggtgtcgcccaaccaggagaac
cgacagatcaaaaagaagaagaagaaaaagaagaggtctcccaagagcctgctgctcaac
ttcgtcactatcgaagagtccaagcccgacgacccgacccacgagcacatcaacggcaag
ctcgacctgcccgttgagctggaggagcagaccatgggcaagtacaactgggccaccacg
cccaccaccttcaagcccgacagtcccgatttagccaagcactacaaatcggcctccccc
cagcccacgttccagatcaaaccggagacccctgttgcacccaagaagcaccacgtcatt
caagagctccctctggacaatacgtttgtggtgggctgtgactcactctccaagtgctcc
tctaccagctctgatccctacagtgtctcagagtgcagctgtcaagggagtttcaagact
cctgggcaaatccacacccgacagaatcaaagttcaactccagacaagacattcactgct
gtgccccaggcttgccctcataaaacgcaacggcgagtgacatttcaccttccggacggc
tctcaggagagctgcagcgacagcggcctcggggaccacgatccggccagctcggccagc
accacacagcccctgcccctgggcttcccacaggaggagtactacgagcagacctcgccc
aacagccgcaccgagggagacggcaactccgaccccgagtccaccattgaagtgaacctg
cagaaggccctggcagaggcgtccgagacgtgcacccaagagtgcctgatcctcggccac
tcggacagctgctggatgcccccggccctgacccagttccagacgtccaccagcaccacg
ctgccctcctttggtttccagcagacctgggcccagggcgccatgcccgacggccgccac
accctctgcaggtcagtgcccaaagacgatctggacaaagggagcaaccggccgcagttc
tacaacacgctggagagacactcgagcaagaaggaggacccggtgaaggtcattccttta
gccagcttctcgtcgtcgccgtcggggcagcagactccggccaacatgggatcgtcgggc
ttcttacacgagcatcagctgtag
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