Sardina pilchardus (sardine): 134068717
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Entry
134068717 CDS
T10667
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil02010
ABC transporters
spil04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
134068717 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134068717 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
spil02000
]
134068717 (abca1a)
Transporters [BR:
spil02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
134068717 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
UvrD_C
Motif
Other DBs
NCBI-GeneID:
134068717
NCBI-ProteinID:
XP_062380433
LinkDB
All DBs
Position
2:28201551..28232515
Genome browser
AA seq
2257 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTLQLIIEVIWPLFIFFILISVRLYYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGETPGVVGNFNDSIISRLFTDAKKILLYSQNDK
SFEGFKRLVRALRKLQRNTAGFKLKDFLRDDETLSEFLEHNATLPKHAVHQIVEADVNLE
KVLIKGFGVHLKDLCNNTSLDDFVAIADKDVSELTQKMICQSSPEWLNQAERHFLSNLDF
LKPIRKDVKSDPKVVQDVSSATDNLLESLGSLAVELVSMKSWRDMRTEIQYLTANATRSP
SHMYQAVSRIVCGHPESGGLKIKSLNWYEDNNYKALFGNYGNSSEDEPVSAYDNSSTPYC
NNMMRNLESSPISRMIWKALKPLLMGKILYTPDTPATQRIIQEVNKTFQEMGVLRDLGGM
WDELRPKLWDFMENSEEMDLVRTLLQNNASARFFNAKLSGTEYRVEDIARFLSKATEAKR
APGSAFTWREVFNETDQAVLTISRFMECVNLDKLEPVANEERLVNKSMRLLDDRKFWAGI
VFPDMQANTSDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSYL
QDIIENSIVRALTGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIII
KGVVYEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLMSAGLLVLILKMGNLLPYSDPG
VVFLFLGSFAVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAK
VFASLLSPVAFGFGCEYFALFEEQGVGIQWTNLLASPMEEDHYSLTTSISLMLFDAFLYA
VMTWYIEAVFPGQFGIPRPWYFPFTKTYWCGEECGGTSSSPDKKSNAEAVCMEEEPAHLE
RGVYIENLVKVYSHGKKLAVDDLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGT
AYILGRDIQTELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYASLKGLSEEKVKSEMEQII
TDVGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK
YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFEP
LLSSCRNSSSTVSYTKKEDSVSESSSDAGLGSDHESETTTIDVSLISNVIFKHVPSARLV
EDLGHELTYVLPYESAKAGAFVELFHEIDDRLTDLGISSYGISDTTLEEIFLKVAEDSGV
DADLSDGTIPTRRNRRHAFGDHQSCLRPFTEDEFDFNDSEGDPESRETDWLGGADGKGSY
QVKGWSLKRQQFVALLWKRFLYAQRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSL
QLEPSMYEEQFSFVSNDAPEDTHTNELLGALTDRFGLGLHCPEGDPSCETPDKDWLVPEI
PVSVSDLFLNGNWSMENPSPLCECSCEGRKKMLPECPPGAGGLPPPQIKVSDVDTLQNLS
GRNISDYLVKTYAQIIGKSLKNKLWVNEFRYGGFSLGARSSQAMPPPDEIHDAITHLKRR
FSLGRGTASDRFLGSLSNFIQGLDTKNNVKIWFNNKGWHSIGSFLNVMNNAILQSSLKGE
DRAKYGINAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVS
KAKHMQFISGVQPFLYWLANYVWDMCNYIVPATLVIIIFVCFQQEAYVSSTNLPVLALLL
LLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSNEIGGINDI
LKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKNLFAMAVEGVV
FFTITVLIQYRFCIKARPIKTHLKPIGDEDEDVARERQRILTGAGQPDILELKQLTKVYK
SKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTSGEAYLAGKSVLTEID
EVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVADWGIRKLGLVKYMDKAA
GSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKEGRSVVLTSH
SMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPTPDLSAVMEFIERE
LPGSTLKERHRNMLQYQLSSARTSLARIFSLLSNHKEALRIEDYSVSQTTLDQVFVNFAK
DQSDEDHSKDISKKDAVVDLSQLSAFLEDDKAKESFV
NT seq
6774 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtatctactcagctaggcttgcttttgtggaagaatttcacttatcgtcggaga
caaacgctccagttgattattgaggtcatatggcccctgttcatctttttcattctgata
tcagttcggctgtactaccctccttatgaacaacatgaatgccattttccaaataaggcc
atgccatctgcgggcacactgccctgggtgcagggcattatctgcaatgccaacaacccc
tgctttcgttaccccacccctggagagacacctggagttgtgggcaacttcaatgactcc
atcatctcgcgactgtttactgatgccaagaagatcctcctatacagccagaatgataag
agctttgaaggattcaagagactagttcgggccctaagaaaattgcaacgtaacactgca
ggtttcaagctgaaagactttctccgtgatgatgagaccctgtctgagttcctggagcac
aacgcgactcttccgaaacacgccgtccatcaaattgtggaggctgacgttaacctggag
aaggtcctcatcaaaggttttggtgtgcatctgaaagacctttgcaacaacacgtccttg
gatgactttgtggctatcgcagacaaggatgtttcagaactgacccaaaagatgatttgc
cagtcctccccagagtggctcaatcaggcagagagacacttcctgtcaaacctggacttt
ctcaaaccaatacggaaggatgtgaagtctgaccccaaggttgttcaggatgtgtcctcg
gcaacagacaacctacttgagagcctgggctctttagctgtggagctggtaagcatgaag
agctggcgagacatgcgcacagagatccagtacctgacggccaacgccactcgctcccct
agtcacatgtaccaggctgtgtcccgcatcgtgtgcggccaccccgaaagcggcggcctc
aagatcaaatccctcaactggtacgaagacaacaactacaaagccctgtttggaaactat
ggcaacagcagcgaagatgaacccgtgtctgcctatgacaactcctccactccgtactgt
aacaatatgatgaggaatttggagtccagtcctatctctcgtatgatctggaaggccttg
aagccacttctgatggggaagatcctctacacacctgacaccccggcaacacagaggatt
atacaggaggtgaacaagacgtttcaggagatgggggtgctgcgtgatttgggtggtatg
tgggatgagctcagaccaaagctatgggacttcatggaaaacagtgaggagatggacctg
gtccggacgctcctgcagaacaacgccagcgcccggttctttaacgccaagctgagtggg
acggagtaccgggtggaggacatcgcccgtttcctgtccaaagccacggaggccaagcgg
gccccagggagcgccttcacgtggcgagaggtctttaacgagacggaccaggctgtactg
accatctcccgctttatggagtgtgtaaacctagacaagctggagcctgttgccaacgag
gaacgtctggtgaacaagtccatgcgccttttagatgaccggaagttctgggcgggaatc
gtgttcccggacatgcaggccaacacctcagacctcccacccaacgtcaactacaagatc
cgcatggacattgataacgtcgagcgcactaacaagatcaaagacgggtattgggatcct
ggtcccagggcggaccctttcgaggacttgcgctacatctggggtggcttctcctacctg
caggacatcattgagaacagcatcgtccgagccctgaccggcagcaaggagaagaccggc
gtctacattcagcagatgccctacccgtgctatgtggacgacatctttctgcgggtgatg
agtcgctccatgcccctgttcatgaccctggcctggatgtactcggtggccatcatcatc
aagggcgtggtctacgagaaggaggcgcggctgaaggagaccatgaggatcatgggattg
aacaacggcacactgtggctcagctggttcatcagcagcctcatccccctgctcatgagt
gccggcctgctcgtgctcatcctcaagatggggaacctcctgccgtacagtgacccgggg
gtggtcttcttgttcctgggctcgtttgcggtggtgaccatcatgcagtgcttcctcatc
agcacgctcttctcccgtgccaacctggcggcggcctgcggcggcatcatctacttcacc
ctctacctcccctacgtgctctgtgtggcctggcaggactatgtgggttttggggccaaa
gtctttgcgagcctgctctcccctgtcgcctttgggtttggctgcgagtactttgcgctg
ttcgaggagcaaggggtgggcatccagtggaccaacctgctggccagccccatggaggag
gaccactacagcctgaccacctccatcagcctcatgctgttcgacgccttcctctacgct
gtcatgacctggtacattgaggcagtcttcccaggccagtttggcatccctaggccctgg
tatttcccattcaccaagacttactggtgtggagaggagtgtggaggaacctcaagctct
ccggataagaagagcaatgccgaagctgtgtgtatggaggaggagccggcccaccttgag
cgtggagtctatattgagaatctggtcaaagtgtacagccatggcaagaaactggcagtg
gatgacttaactctgggattctacgaaggccagatcacatcgtttttgggccacaacgga
gccggaaagaccactaccatgtccatcctgacaggcctgttccctccgacatcaggcacc
gcctacatcctgggtagagacattcaaaccgagctgagcaccatccgtcagaaccttggt
gtctgcccacagcacaacgtcttattcagcatgctgactgtagaggagcacatctggttc
tatgctagtctgaaggggctttctgaggagaaggtcaagtcagaaatggagcagatcatc
actgacgtcggcctgccgcacaaacggaagtcccgcaccagccaactctctggagggatg
cagaggaagctatctgtggcactggcctttgtaggaggatctaaagtggtgattttggat
gaacccactgctggagttgacccttatgcccgcagaggcatctgggaccttctgctcaag
taccgtcaaggccgcaccatcatcctgtccacccatcacatggacgaggccgacatcttg
ggcgaccgcattgccatcatctcccacggcaagctgtgctgcgtgggctcctccctcttc
ctgaagacccagctgggcacgggctactacctaaccctggtcaagagggactttgagccc
ctactcagctcctgcaggaactccagcagcactgtctcctacaccaagaaggaggatagt
gtctcagaaagcagctctgatgctggtttaggcagtgaccatgaaagtgaaactacaacc
atcgatgtctctctgatctcaaacgtgatcttcaagcatgtcccatctgctcggctggtg
gaggatctgggccacgagctcacgtatgtcctgccctacgagtccgctaaggcaggggcc
tttgtggagcttttccatgagattgatgaccgcctgactgacctgggcatttccagctac
ggcatctctgacaccaccctggaggagattttcctgaaagtggccgaggacagtggagtt
gatgctgacctttcagatggtaccattccaacacgcagaaaccgcaggcatgcctttggg
gaccaccagagctgcctaaggcctttcaccgaagatgaatttgacttcaatgactcagaa
ggtgatccagaatcgcgtgagacagactggctgggtggcgcagacggtaaaggctcatac
caggtcaagggttggagcctgaagaggcaacagtttgtggccttgctttggaaaaggttc
ctgtatgctcagcgctccagaaaaggattctttgctcagattgtgttgcctgctgtgttt
gtctgcatcgccctggtcttcagcctcattgtcccaccgtttggaaagtaccccagcctg
cagctagaaccaagcatgtatgaggaacagttcagctttgtgagcaatgacgcccctgaa
gacacacacaccaacgagctcctgggtgccctgaccgaccgctttggacttggactgcat
tgccctgaaggagacccttcgtgtgagacgcctgataaggattggcttgtccccgagatt
cccgtctctgtgagcgacttgttcttgaatgggaactggtccatggaaaacccgtcgccc
ttgtgcgagtgcagctgtgagggccgcaagaagatgcttccggaatgtccccctggagcg
ggtggtctcccacccccacagattaaagtcagcgacgtagacactctgcagaatctgagt
ggaagaaacatctcagactacctcgtgaaaacctacgctcagatcattggaaaaagcctg
aagaataaactctgggtgaatgaattcaggtatggaggattctctctgggtgccaggagt
tctcaggccatgcctcctccagatgagatccatgatgccatcactcacctcaagagacgc
ttcagcctgggaaggggaactgcgtctgaccgcttccttggtagcctctctaacttcatc
caaggtctggacaccaagaacaatgttaagatttggtttaacaacaaaggctggcacagc
attgggtcgtttttgaatgtgatgaacaatgccattctgcagtccagtctgaaaggagag
gaccgtgccaaatatggcatcaatgccttcaaccatccactcaacctcactaaggagcag
ctctcacaggtggcactgatgaccacttcagtggacgtgctggtgtccatctgtgtgatc
ttcgccatgtcctttgtcccggccagctttgtggtcttcctcattcaagagcgtgtcagc
aaggccaaacacatgcagttcatcagtggtgtgcagccattcctctactggctggccaac
tacgtctgggatatgtgcaactacatcgtccctgcaaccctcgtcatcatcatcttcgtg
tgcttccaacaagaggcgtatgtgtcctccaccaacctgcctgtgctggctctgctgcta
ctcctctatgggtggtccatcacacccttgatgtacccagcctcgttcttcttcaagatc
cccagcacagcctatgtagtcctcactagtgtcaacatccttattgggatcaatgggagc
gtctccacctttgtgctggagctgtttggcagcaatgagattggtggcatcaacgacatc
ctgaagaacgtgttcctcatcttccctcacttctgtcttggtcgtggcctcatcgacatg
gtgaagaaccaagccatggcagacgccctggaaagatttggagagaaccggttccgctcg
ccgctggcctgggacatggtgggcaagaacctgttcgccatggctgtggagggggtggtc
ttcttcaccatcaccgtgctcatccagtaccgcttctgcatcaaggccaggcccatcaaa
actcacctgaagcccattggggacgaggacgaggacgtggccagagagaggcagaggatc
ctgaccggagcaggccagcccgacatcctggagctcaagcagctcaccaaggtttacaag
agcaagcagaagccagcagttgaccgcctgtgtgtgggcatccctccaggagagtgcttt
ggcctactgggtgtgaatggagctgggaagacgagcaccttcaagatgctgaccggggac
tcagtggtcaccagtggggaagcctatcttgctgggaaaagtgtgctcacggagatcgat
gaggttcatcagaacatgggttactgccctcagttcgatgccattaatgacctgctgact
ggcagagaacacctggaattctatgccattctgcgaggagtacctgagaaggaagtgtgt
gaggtggcagactgggggatccgtaaactgggtctggtgaagtacatggacaaagcagca
ggaagctacagtggaggaaacatgcgcaaactctccaccgccatggctctgatcggaggt
ccgcccgtcgtcttcctggacgaacccacgactggtatggaccccaaggcccggcgggct
ctttggaactgcatcctcagcatcattaaagagggacgctccgtggtgctcacctcccac
agtatggaggagtgtgaagccctgtgtacacgcatggccattatggtcaacggaagattc
cggtgcttgggaagcgtgcagcacttaaaaaacaggtttggagatgggtacaccatcatc
ctgagggtggcgggtcctacccctgacctgagtgcggtgatggagttcatcgagcgcgag
ctgccgggcagcaccctgaaggagaggcaccggaacatgctgcagtaccagctgtcctcc
gcgcgcacctccctcgcacgcatcttcagtctgctctccaaccacaaggaggcgctgcgc
atcgaggactactccgtctcgcagacaacactagaccaagtatttgtgaactttgccaag
gaccaaagtgacgaggaccactcaaaagacatttccaagaaggatgccgtggtggacctc
tcccagctcagcgccttcctggaggacgacaaagccaaggagagctttgtgtga
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integrated database retrieval system
