Sardina pilchardus (sardine): 134068746
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Entry
134068746 CDS
T10667
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134068746 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spil03021
]
134068746 (polr1a)
Enzymes [BR:
spil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134068746 (polr1a)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
134068746 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
134068746
NCBI-ProteinID:
XP_062380474
LinkDB
All DBs
Position
21:11507806..11527694
Genome browser
AA seq
1693 aa
AA seq
DB search
MLFAKELPWRRLEGMSFGLYSSDEIRLLSIKTITNPQILDNVGNPACNGLYDLALGPSDN
KEVCSTCMQDYNNCPGHFGHVELPLPVFNPLFFDKLYLLIRGSCLVCHTLSCPRSAIHLL
LGQLNLLNVGALKEVYELENVLNQFLEINRQATGIEIQEVLEEFCAPILRAEKNQTAHHT
PIKHVCEKKGSLITNFWRVHMTPKRCPNCKAPKAVVRREHNSKLIITSARSKKMEEEEVD
AQVSKRGYLTPSLAKEHIINLWEKEGFFLKHLFSGLDSEGSQNVFKPDLFFLDILLVPPS
RYRPINRMGDQMFTNGQTVNMQAVMKDNVLIQKLLALIATEKVKAIEDTEIETEMEKETS
QIDRTFLTGLPGQTLTDKLYNVWIRLQSHVNIVFDSDMDKMMTEKFPGVRQLLEKKDGLF
RKHMMGKRVDFAARSVICPDMYIDTSEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGP
SVHPGAAMVINEDGSRTILSSTSLTQREAIAKQLLTPSTGTQRIPMKIVNRHIKNGDVLL
LNRQPTLHRPSIQAHTARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAY
TLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTELVYRGLTDKVGRVK
LLHPAILKPCPLWSGKQVVSTLLLNVIPENHVALNLTGRAKIPSKSWIKMAPRPVPGYQP
DIMCDSRVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGQTSGKLLTCLARLFTAYL
QLYRGFTMGVEDILVKPAANVERTKIIEESVTCGAKALKAAFSLPASAAEAEGRDHWQNA
HLNPDQRDFNMVDLKFKEEVNQVNNNINKVCMPMGLHRSFPENNLQLMVQSGAKGSTVNT
MQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDSAPRSGGFVSGRFLTGIKPPEFFFHCM
AGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKT
QFLLPRQFPFIKDNYEVIRKSKCLDEVLSKMDSSVSANHQKAIKRWRAKRENVCPRNGAF
LLFTQKKLAKTKAHTQDAAMTNGREEASLQLVERWAGLDESNRMKYLKKTSRCPDPCIAV
HRPDISFGSVSETFDSILESYLSEFENSPNPNVAKDLDADRLRELLQLKWQRALCDPGEA
VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSKIKTPMMSIPVLN
TKKALKKVKVLKKKLNRVCLAEVLHKVDVVETLRFDGKKAQDKNRVFNVAFHFLPPERYQ
QDKMLTPQQILRYMESRFFRILLEAIKKMSIKLASLTAVDTRKATRRDEDQHGEAAGPAE
QADGEANAEEEMRIVDDEADEGDADASDAKRRGKQEEEVDYDSEEGGGEEEEEVAEGEPV
EEETREEESQEAPAPDSAPLPDKLEETESQDEMRVNAVLAIGSSIESYKYDSVNGLWCEA
TIILPVSNVHFDLTSLIVTQAQNAVIVETKGITRCLLNEVTKKDGSKETILNSEGINMHE
IFKHGDILDLNRLYSNEVHTMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADY
MCFEGVYKPLNRFGIRSNSSPLQQMTFETSYKFLKDATMLGLHDQLRSPSACIVVGKVVK
GGTGLFDLKQPLQ
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgcaaaggaactaccatggaggcgactcgagggcatgtcgtttggtttatac
tcttcagatgaaataaggctattgagtataaaaaccatcacgaatccccagattctggac
aacgttggcaaccctgcttgtaatggcctgtatgatctagcactcgggccctctgataac
aaagaagtgtgctcaacctgtatgcaggactataataactgccctggccactttggacac
gttgaattacctttgcctgtcttcaaccctctattttttgataaactctacctgctcatc
agaggatcctgtttagtttgtcacaccctcagctgtcctaggtctgccattcatctcttg
cttggccagctgaatctgctgaatgttggtgcactgaaagaagtctatgagctagagaat
gttctcaatcagtttttggaaatcaatcgtcaagctactggtatcgagattcaagaggtc
ctagaggaattctgtgccccgattctacgagcagaaaagaatcaaacggcgcatcacact
ccaattaagcatgtgtgtgaaaagaaaggcagcctcatcacaaatttctggagagttcac
atgaccccaaagcgatgcccgaactgcaaggcacccaaagctgtagtgaggagagagcac
aacagcaagctcatcatcacaagtgctcgatccaagaagatggaagaagaagaagtggat
gcccaggtttccaagcggggataccttacgcccagtttggccaaggagcatatcataaat
ctttgggaaaaggaagggtttttcctgaagcacctgttctctgggctggattctgaaggc
tcacaaaatgtcttcaaaccagatctgttcttccttgacattctcctggttccaccgagc
aggtaccggcctatcaaccgtatgggagaccagatgttcaccaacggtcagacagtaaac
atgcaggctgtgatgaaggacaatgtcctgattcagaagctactggctctcatcgccacg
gagaaggtaaaggcgatcgaagacactgagatcgagacggagatggagaaggagacaagt
cagatagaccggacatttctgaccggcctgcctggtcagaccctcacagacaagctgtac
aacgtctggatccggctgcagagccacgtcaacatcgtgtttgacagtgacatggataag
atgatgactgagaagtttcctggcgttaggcagcttctggagaagaaggacggtctgttt
aggaagcacatgatggggaagcgagtggactttgctgctcgttctgtcatctgcccagac
atgtacatcgacaccagtgagatcggcatcccaatggtgtttgccaccaagctgacgtac
ccgcagccagtgacgccgtggaacgtgaaggagcttcggcaggcggtgctcaacgggccc
agcgtgcacccgggcgccgccatggtgatcaacgaggacggctcgcgcaccatcctgagc
agcaccagcctgacccagcgcgaggccatcgccaagcagctgctcacgcccagcaccgga
acacagcgcatccccatgaagatcgtgaaccggcacataaagaacggcgacgtcctgctc
ctgaaccggcagcccactctccacaggccgtccatccaggcccacacggcccgcatcctg
cccggcgagaaggtcctgcggctgcactacgccaactgcaaggcctacaacgcagacttc
gacggcgacgagatgaacgcccacttccctcagagcgagctgagcagggcggaggcctac
acgctcgtcagcacggaccagcagtacctcgtccccaaggacggaaagcctctggccggc
ctgatccaggaccacatggtgtccggcaccagcatgaccatccgaggctgcttcttcacc
agggaccagtacacagagctggtctacaggggcctcaccgacaaagtgggccgagtcaaa
ctgctccacccggccatcctcaaaccatgtcccttgtggtccggcaagcaggttgtgtcc
acccttctcttgaacgtcatccctgagaaccacgtcgccttgaatttgactggcagagcc
aagatccccagcaagtcctggatcaaaatggctccccgtcctgtgcctggataccagcct
gacatcatgtgtgactctcgggtggtcatccgccagggggagctgttggtcggggttctg
gacaaggctcactacggcagctcggcctacgggctggtacactgctgctacgagctgtac
ggcggacagaccagcgggaaactgctgacctgcctggcgcgcctcttcaccgcctactta
cagctgtaccgcggcttcaccatgggagtggaggatattctagtgaagcctgccgccaac
gtagagagaacaaagatcatcgaagagtctgttacatgcggagccaaggctctgaaagcc
gccttcagcctccctgccagtgcggcagaggcggagggccgggaccactggcagaatgcc
cacctaaacccagaccagagagacttcaacatggtggacctcaagttcaaggaagaggtc
aaccaagtcaacaacaacattaataaggtgtgcatgcctatgggtctccataggtctttc
cctgagaacaacctgcagctgatggtgcagtctggggctaagggctccactgtcaacacc
atgcagatctcctgcctgctgggtcagattgagttagagggcagacgtccacctctgatg
ccctctgggaaatccctgccctgtttccagccttatgacagcgctccccgctcaggcggc
tttgtgtccggaaggttcttgaccgggattaagccaccggagttcttcttccattgcatg
gctggccgtgaaggtcttgtggacacagctgtgaagaccagtcgatcaggctatctgcaa
agatgtgtgatcaagcacctggagggcctggtggtccagtacgacctgaccgtgagggac
agtgacggcagcgtggtgcagttcctctatggggaggatggcctggacatccccaagacc
cagttcctcctaccgcgccaattccccttcatcaaggacaactacgaggtcatcaggaag
tccaagtgcctggatgaagtcctgtccaagatggactccagcgtctcagccaatcaccag
aaggccatcaagaggtggagggccaagcgagagaacgtatgcccccgaaacggagccttc
ctgctcttcacgcagaagaagctggccaagacgaaggcccacactcaagatgctgccatg
accaacggccgagaggaggcctctctgcagctggttgagcggtgggccggtttggacgag
tccaaccggatgaagtatctgaagaagacgtctcgttgccccgacccctgcatagctgtg
caccgaccagacatctccttcggctctgtgtccgagaccttcgactctatcttggagtcc
tacctcagcgagtttgagaatagtcccaaccccaacgttgccaaggacctggatgccgac
aggctgagggagctgctgcagctgaagtggcagcgggcgctgtgtgaccccggggaggct
gtggggctcctggccgcccagagcatcggggagccgtccacccagatgaccctgaacacc
ttccacttcgccggtagaggagagatgaacgtcaccctcggtatccccaggttgcgtgag
atcctgatgattgccagctccaaaatcaagactcccatgatgagtatccctgtcctgaac
accaagaaagccctgaagaaggttaaagtcctcaagaagaagctcaatagagtgtgtttg
gctgaggtccttcacaaggtggatgtggtggagacgctgcggttcgacggcaaaaaggcc
caggacaagaacagagtgttcaacgtggctttccacttcctgccaccagagcgctaccag
caggacaagatgctcaccccgcagcagatcctgcgctacatggagagcaggttcttcaga
atactgctggaagcgatcaagaagatgagcatcaagctggcctccctcaccgctgtggac
acacgcaaggccacgcggagggacgaggaccagcacggagaggcggccgggcctgctgag
caggccgatggagaggcaaacgcagaggaagagatgaggatcgtcgacgacgaggcagat
gaaggagacgctgacgcctccgatgccaagaggagagggaaacaggaggaggaggtggat
tatgacagtgaggagggcggtggtgaggaggaggaggaagtggcagaaggagagccggtg
gaagaagagacccgagaagaggagtcccaggaggctccggcccccgacagcgcgccgctc
cccgacaagctggaagagacggagagccaggacgagatgagggtgaacgctgtgctggcc
attggcagcagcatcgagagctacaaatacgacagcgttaatggactctggtgtgaggcc
accatcattctcccagtctctaatgtgcactttgacctgacgtcactcatagtgactcaa
gctcagaatgccgtcatcgtggaaacgaaagggatcacgcgctgccttctgaatgaggtc
accaaaaaggatggttccaaagagaccatcctcaactcagagggcataaatatgcatgag
atctttaaacatggcgatattcttgatttgaataggctgtactctaacgaagtccatacc
atggccaacacatatggcattgaagtggccctgcgggttattgaaaaggaaatcaaagac
gtgtttgccgtgtatggtattgaagtggaccctagacacttgtctctagtggctgactac
atgtgctttgaaggtgtttacaaacctctgaaccgatttggcatcagatcaaactcctct
cccctacaacagatgacctttgaaacgagctacaagttcctcaaggacgccactatgctg
ggcttgcatgaccagctgcgatctccctctgcttgcatcgtggtcgggaaagttgtcaaa
ggaggaacagggctttttgatttgaagcaaccattgcagtag
DBGET
integrated database retrieval system
