KEGG   Sardina pilchardus (sardine): 134068830
Entry
134068830         CDS       T10667                                 
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    134068830 (wdr33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spil03019]
    134068830 (wdr33)
Messenger RNA biogenesis [BR:spil03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     134068830 (wdr33)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_IFT140_1st EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT122_1st eIF2A Beta-prop_Vps41 WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_WDR11_2nd Beta-prop_HPS5 Beta-prop_WDR41 PEP5_VPS11_N Ge1_WD40
Other DBs
NCBI-GeneID: 134068830
NCBI-ProteinID: XP_062380598
LinkDB
Position
2:complement(28372849..28390861)
AA seq 1147 aa
MATDIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDFRAIQPDAGCYNDLVPPMGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDTPVRAMTWSHNDMWMLTAD
HGGYIKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNQNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGMFASGGSDGSLLFWN
AGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDNEPNSLAAIPGMGIPEQLKVAMEQEQTNKEPAAEAEMTIPGLDWGMED
LMQKDLKKVPQKKVPYAKPIPAQFQQAWSENKVPALPAPEMPKERKDEKKVDGKKKTQAE
IEQEMAALQYTNPMLLEQLKIERMAQLQNEQGMPPPGGQPGSMPPFPGQGGPMPPPPQGF
PQNMPPQQMPPPNMPPMGPGGMQGPFMPQGPNMGPPGPQGPPQGMMGPPDFHGPQGMQRH
PGPPRNMGPQGPHGMPPGPRGMQGPPPGGMQGPPGGMMPPRGMGPRDGQGPPQGGMMHQD
MRGPAPHGNMMGGMMGPPMASPPRTHGNMPGPGMGNMHGMGNMQGPPPGGMHGQGPPGHM
QGPPGNMQGPPGNMQGPPGNMQGPPPYMQQGKPGQFNQGGQNPGPQPMMHGMSQQGPNGD
GSRGPPNHHLGPPPDRQGPGGPGGPGHGPEGGGPPYWGDNREGRRGPPEFEGSDGGFHGR
GGDEGWRRGGSEYQGDPRSHRGGASGNWEGQERYQRDGEFRGHDRFRRGGPGGPQGRGSR
SFPEEYGGEEGFEGQEDVGQGWESRGRGRPRGGGPPRGGGGRKGLLPTPDEYPPHYEGGR
NQEGWEGGRDPGHEGYRDGPRQDHHDNPSPAGRERSSSLQGMDMASLPPRKRPWHDGPGS
NEQDSPGAGPEDRGAGRPPPREEGGYGPPGRGGRGGWGRGGGSDRGGGGPGSGPTTRRGS
MRGGRGR
NT seq 3444 nt   +upstreamnt  +downstreamnt
atggcgacagacatcggttccccgccacggttcttccatatgcctcggtttcagcaccag
gccccgcggcagctgttctacaagcggccagattttgcccagcagcaggccatgcagcag
ctgacgttcgatggcaagcgtatgaggaaggctgtcaaccgcaagaccatcgactacaac
ccctctgttatcagataccttgagaatcggctgtggcagcgtgaccatagagatttccga
gcaattcagcccgatgcaggttgttacaatgacctcgtgccccccatgggtatgctgaac
aacccaatgaacgcagtcactacaaagtttgtcagaacctcaaccaacaaagtgaaatgc
cctgtctttgttgtgcggtggacccctgagggcagacgattggtcactggggcctccagt
ggggagttcacattgtggaacggcctcacctttaactttgagaccattttacaggctcat
gacactcccgtaagggccatgacctggtctcataacgacatgtggatgctgactgcagac
cacggcggctacatcaagtactggcagtccaacatgaacaacgtcaagatgttccaggcc
cacaaggaggcgattagagaggccagtttctcacccacggataataaatttgccacttgc
tctgatgatggaactgtgcgcatctgggactttctccgctgtcacgaagagaggattctt
agaggtcacggtgcagatgtgaagtgtgtggactggcatcccaccaagggcctggtggtg
tccgggagcaaagacagccagcagcccatcaaattctgggacccaaagacgggacagagt
ttggccacgcttcacgcccacaagaacaccgtgatggaggtgaagtggaaccaaaacggc
aactggttgttgacggcgtcgcgtgaccacctgtgcaagcttttcgacatccggaacctg
aaggaggagctgcaggtgttcagaggccacaaaaaagaggccacagctgtggcctggcac
cctgttcacgagggaatgtttgctagtgggggctcagatggatccttgctcttctggaat
gctggggtggagaaggaagttggtggcatggagatggcacatgaaggcatgatctggagt
ctcgcttggcatccactcggccacatcttgtgctctggctccaacgaccacacaagtaaa
ttttggaccagaaatcgcccaggagacaaaatgcgcgaccggtacaatctgaacctatta
ccagggatgtcagaggatggcgtggagtacgatgacaatgagcccaacagtttggctgcc
atccctggcatgggaatcccagagcagctgaaagtggccatggagcaggagcagactaat
aaagaaccagcagctgaggcagagatgaccatcccagggctggactggggaatggaggac
ctcatgcagaaggacctgaagaaagtcccacagaagaaagtgccctacgccaaacccatc
ccagcccagttccaacaggcctggtcagagaacaaggtgcctgccctccccgctccggag
atgcccaaagaaaggaaggatgagaagaaggtagatggaaaaaagaagacccaggcagag
atagagcaggaaatggctgctctacagtacactaacccaatgctgctggagcaactgaag
attgagcggatggctcagctacagaacgagcagggcatgcctccccctggtggtcaacct
gggtcgatgccccctttccccggccagggaggaccgatgccaccacctccccaaggcttt
ccccagaacatgcccccgcagcagatgcccccacccaacatgcccccgatgggtccaggg
gggatgcagggccccttcatgccgcagggccccaacatggggcctccagggcctcagggc
cctccgcagggcatgatgggacctccagactttcatggcccccagggcatgcagaggcac
ccggggccccccaggaacatgggccctcaggggccccacggcatgcctcccggcccgcgg
gggatgcagggtcctccccccggtgggatgcagggcccgccaggtggcatgatgcctcca
cggggcatggggccccgagacggtcaggggccgccacagggaggcatgatgcaccaggac
atgcggggcccagcgccccacggcaacatgatgggcggcatgatggggcctcccatggcc
agtccccccaggactcacggcaacatgcccggcccgggtatgggcaacatgcatggcatg
ggcaacatgcaaggacccccacctgggggaatgcatggacagggacctccgggtcacatg
cagggaccccctgggaatatgcagggccctccagggaacatgcaaggacctcctggaaac
atgcagggcccacccccatacatgcagcagggtaaaccaggacagttcaatcagggagga
cagaaccccggtccacagccgatgatgcatggaatgtcacagcaaggacccaatggagat
ggttcccgggggcctcccaaccaccacttaggtccgccgcctgatcggcaggggccagga
ggcccagggggtccaggccacggcccagagggaggcggcccgccgtattggggcgacaac
agggagggccgtcgtggcccacccgagttcgagggctccgacggtggcttccacgggcgc
ggcggggacgagggttggaggagagggggctccgagtaccagggtgaccccaggagtcac
cgtggaggagcctcggggaactgggagggccaggagaggtaccagcgcgacggcgagttc
agaggtcacgacaggttccggcggggaggaccaggaggcccccaggggcgcggcagccgg
agcttccctgaagagtacgggggcgaggagggcttcgaaggccaggaggacgttggccag
ggctgggagagccggggacgaggtcggccacgaggaggaggaccgccccgcggaggaggt
ggaaggaagggcttgctccccacccctgacgagtatccccctcactatgagggaggaaga
aaccaagagggctgggaagggggtagagacccaggtcatgagggctacagagatggacca
cgacaggatcaccacgacaacccgtcgcctgctggccgagagcgctcgtcttctctgcag
ggcatggacatggcgtccctgccgccacgaaagcgtccgtggcacgacggcccgggctcc
aacgagcaggactctcccggggccgggccagaggaccgaggagcaggtcgaccgcccccg
cgagaagagggtggctacgggcccccggggcggggggggcgaggaggctggggccgggga
ggcggctcagaccggggcggaggcggccctggctcgggaccaaccacacgccgcgggtcc
atgcggggcggccgcggccgatag

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