Sardina pilchardus (sardine): 134069882
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Entry
134069882 CDS
T10667
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spil03016
]
134069882 (trub1)
Enzymes [BR:
spil01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
134069882 (trub1)
Transfer RNA biogenesis [BR:
spil03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
134069882 (trub1)
Prokaryotic type
134069882 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
PRC2_EED_ins
Motif
Other DBs
NCBI-GeneID:
134069882
NCBI-ProteinID:
XP_062381997
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All DBs
Position
22:complement(24957690..24967425)
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AA seq
315 aa
AA seq
DB search
MRSMASTGANIVQNVSSLSKLKSLNGIFAIYKKCGPTSADVLNSLKEKLLKEAGVANPNP
RKRKKQALKIGHGGTLDSSASGVLVVGIGEGTKMLTTMLAGSKKYRAVGELGKATDTLDA
SGTVVHEKSYEHVTREALEEHLQKFTGDIMQVPPLYSALKKDGKRMSVLLKQGQEVEAKP
ARPVTVYNLTVTDFSPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVHELVRTKQGQFT
LDEHALKEEQWTLERVSAALQACPPTAKPQPGQHSNAKHNNNNNNNSSSNSNTLPQPGTP
EQPKDDRADGANNKD
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgagaagcatggcttcgaccggtgcaaatatcgtccaaaatgtgtcctccttgtctaaa
ttgaagtctttgaatggaatatttgccatttataaaaaatgcggaccaacatctgctgat
gtgttaaactctttgaaagagaaactcttgaaagaggctggcgtggcaaatcccaatccc
cgtaaaaggaaaaaacaagccctgaaaatcggtcatggtggcactctggatagctcagcc
tctggtgttctcgttgttgggataggagaaggcacgaagatgctcaccaccatgcttgca
ggttcaaagaaatacagagcggtgggagagttgggcaaagccacggacacactggatgcc
agcgggactgtagtgcacgagaagagctatgagcacgtgacccgggaggccctggaggag
catctgcagaagttcaccggagacatcatgcaggtccctcctctctactcggctctgaag
aaggatggcaagcgtatgtctgtgctactgaaacagggtcaggaggtggaggccaagcct
gcccggcccgtcaccgtctacaacctcaccgtcacggacttcagcccgccactcttcacc
ctggacatagaatgtggtggcggtttctacgtcagaagcttggtggatgaccttggaaaa
gccctgtcgtcctgtgctcacgtgcacgagctggtgcgcaccaagcagggccagttcacc
ctggacgagcacgcgctgaaggaggagcagtggaccctggagcgcgtcagcgccgccctg
caggcctgtcccccgaccgcaaagccccagcctgggcaacacagcaatgcaaagcacaac
aacaacaacaacaacaacagcagcagcaacagcaatacattgccacagcccggcacacca
gagcagcccaaagatgatagagctgacggagccaataacaaggactga
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