Sardina pilchardus (sardine): 134070628
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Entry
134070628 CDS
T10667
Symbol
jmjd1cb
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spil03036
]
134070628 (jmjd1cb)
Chromosome and associated proteins [BR:
spil03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134070628 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
JmjC
FYVE
zf-C5HC2
Motif
Other DBs
NCBI-GeneID:
134070628
NCBI-ProteinID:
XP_062383006
LinkDB
All DBs
Position
22:complement(5759777..5832018)
Genome browser
AA seq
2788 aa
AA seq
DB search
MQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRTMVVMNDQVLEPQNVDPSMVQMTF
LDDVVHSLLKGENIGITCRRRSRSSTNSSTAHTSGGRPTTTAGGTQGHYTRAQANSPRPV
MNSSSSTPKQAGQSQQQQQQLSQQAQQQQQQPTHQHQQQQQQQQQQQPQSSPGQQRGSRS
SRRKGSDSSVPDDDSNNKVKEEKPDVTARGDFSSKSKSKQTASRRRKVEEDEKKSSALKR
LKTEASDQSESSDSENSQRRGRASADSSSSSSSSSSSSSEPSSENELRGKSIKEELPSPP
PPPEQRPSRTQEEDRDRERERELRDREQREREHREQREREQALIGRLSPWDTLRPEEKSS
KAAAVAVETLQLAEGERRSPRSPRPPHPSGPAPVATETQGSGGASGGNIGGGGGSSGGCI
VDMRSTGRSPAKEHYGLTVPIPQRTQAAKQASLCVIDITEDAGAHPSSRESSEAVSALLA
SQKAERYTPEPRHLVLTPTPTDLRKGDNEPPQQHHQQQHQHPHHHHHQQQQQQQQQHHLH
HPHHPHHHLHHMHQPQVVRSSQGVKLEFGHLEVIQPLSAKSESAAALAERAEREKLSAQQ
YAAIVPSCIKSAAIAEETRRPQRPSPSPDATKPPPPPPSPLQGRLHGHPNRNPSPELHKP
LLHHHHPPPHHHHHQHHQHHASLSALDAPAKSKSLAVGTLESPKPRPNTSPEVSKHKTAQ
RHPGQDGPPHNSFPPSSSSSSSSSSSSLASLASPSSGRGGVCKREPSPSPAGPVRSSFKP
VQGRCELAKSPLIIDKNEHFTVYRDPALVRPESEPSASSSSSSAAAAAAAAAANHHVAYL
HSHLHPLHGSQHATCLTAGAHHPSHLLAPPPASINPHAAPPSHAMHHPHLMPGVGVGVGV
LPSSLLGGHARVDSGGLSQHLAMAAAAAQAQAQAQAQAQAHHHPHQHAHPHAHQHQQQQF
LSPQHQGPAGAPYNLYPIIWPYPNGGPHSYPPGLGLPVSSDSSLRRNTPSPWLHQHPPVS
SADGLALLSHVPGRPASADPHRPLKIGSHASPPLCKSAGELHKEELEKKAFADHMGSLAT
AHLKQEPDRSRTPTGKELHHRGYLDPPSKAPRLVPPPDASERASKYKEENRRILQESRDV
APFTAKLRPNECEREPPYPRMPHQPLPGSGGSIAPPGGAPKSHSAPSAGPVDRDASEHRP
PSASELYKFKPQSNYFTTLSNSVVNEPPRLYPSKELNSPCHSFFDKVVGTPSSSPSPLSL
GFVGGGGGGVTGSGGGGGGGGGGGGNSGGSKSLSKPPPLIKHQPEGEGLVGKITEQLSQQ
AAAALHPIGCPPQGGAEPRRSPALSPPGQLRMPALHRAPVFHPPTQQTLDQRKEAANYGR
LSPPTLTPIQPVCVAGKLPEQQKPPTLLPELREVKSGGMELAGGAGEPWRVGTDVAGHEG
GRGGAWHGEKSRTSKPQGATASVIVRPSTCIKYDGGSSGIKASAAAAAREINEIGKPFAV
KSQADGLKLAETRDMTGRVILPNTNLEDACAQYRKSMIRTSQAGPASPVVALVNSVCNTR
TEVTTSSATSAAAFSVFSRGGGSDLCFPASTNANFNANAHAYGGGRTDGSTPRLWPLEVQ
EGGGGSRTTSPNDALPSSGTASPALQQQQQQQQAYPGNFHLKKHKAALAAAQSRGLGTPE
NERPPLGPSPPGAPIQDASSAAAATAASAAGAQPPVNNVAAKGGGAAMPNGQSSTPPPPP
IQPNYHKLKKAWLTRHSEEDRNTNPPEKPGGSSSSAASTPTSEIIKPCTVHLIASTSSTS
TSSSSGEATDSGKEGKEAGSEDGGSGGGSQKSSPEEDRRTRRGGSKRAYESGSESGEDSD
ASEGTKMAQRAKRQPKPTFKKKQNDMQRRKEDDDNKPNGIFRSAREKTKLKLASSNGIPR
SVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQKCRECRVLRSKKGEEPAHSPVFCRFYY
FRRLSYSKNGVIRIDGFSSPDQYDDEAVSLWAPDMYEENELDLDTSKYILSYIGDKFCQL
VTTENTAASWVKKDAKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAKE
RKSSKDKELYAWLKCVKGQPHDHKHLMPTQIIPGTVLTDLVNAMHGLREKYGIRTHCVCA
ASKQTALLGKLPSTNGVSQVLQNVLNHSNKISLCKPEGPPTNATPKLETNGGGAGSPASD
AGSDPKLTPPESQSPLHFLADLAEQKSREEKKENKESVKSVKEEVGEAVEALHCKATSLV
SGGSEQGSTLRDLLTTTAGKLRLGSTDAGIAFAPVYSTATQTGKTGRSVPNILDDIIASV
VENKIPASRGAKLALKQEPVAEETRGLERKPSRPAAVTTPTMIPMADEPPAAAAVQKLQA
DIAHCWLYGQKMLWLKDHRNSCNWRLFRECWKQGQPVLVSGVHKKLNASLWKAESFNQEF
ADHQGDLLNCKDSVVISNSGIKEFWDGFEDLTKRPKCKDGEPMVYRLKDWPSGEEFMALM
PSRYDDLMKNLPLPEYSDPEGNLNLASHLPSFFVRPDLGPRLCCAYGVAASQEQDFGTAN
LHVEVSDIVSVLVYVGVAKGNGVLSKTGVLKRLEEEDLDEQVKRRLKDSSETPGALWHIY
VSKDVDKIKEFLHKVAKEQGGEIPAEQDPLREQGWYLTRKLRQRLLEEHGVQGWTVVQFL
GDSVLIPAGALHQVQNLHSCVQVINDFVSPEHVAHSFRLTQELRASKEEINYEDKLQVKN
ILYHCVKNAVATLKRCCSEEQGEEEENS
NT seq
8367 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtccctactcgttaaatggctacagagtacgcgtctacaggcaggactcggcc
acacagtggtttacaggcatcatcacccaccacgacctcttcagtcgcactatggtggtg
atgaacgatcaggtactggaaccgcagaatgtcgacccctctatggtacagatgactttt
ctggatgacgtcgtccactctttgctgaaaggagagaacataggcatcacatgcaggcgc
aggtctcgctctagcaccaacagcagtacagcccacacgtcaggagggagacccaccacc
accgcaggaggcactcagggtcactatacacgagcccaggctaacagccctagaccagta
atgaactcgtctagctccacccccaagcaggctggccaatcccagcagcagcagcagcag
ctatcccagcaggcccagcagcagcagcagcagccaactcatcagcaccagcagcagcag
cagcagcaacaacaacaacaaccgcagtcgtcgccggggcaacagcgaggctcgcgctcc
tcgcggcgcaagggctccgacagcagcgtccccgacgacgacagcaacaacaaggtcaaa
gaggagaagcccgacgtcacggcacgaggagacttcagctccaagagcaagagcaagcag
acggccagccggaggcggaaggtggaggaggacgagaagaagagcagcgcgctgaagcgt
ctgaagacggaagcctcggaccagtcggagagcagcgactcggagaactcgcagaggcga
gggcgcgcctcggccgactcttcctcctcgtcctcctcctcgtcctcctcgtcctcggag
cccagctcggagaacgagctgcgggggaagagcatcaaggaggagctgccgtcgcctcct
cctccgcccgagcagcggccctccaggactcaggaggaggaccgcgaccgggaacgggaa
cgggagctgcgggatcgggagcagcgggaacgggagcatcgggagcagcgggagcgcgag
caggccctgattggccgcctgtcgccgtgggacaccctccggccggaggagaagagcagc
aaagcggcggcggtcgccgtggagacgctgcagctggccgagggcgagaggaggtcgccg
cggtcgccgcggccaccgcatcccagcggccccgcccccgtcgccacggaaacgcaaggc
agcggcggtgctagcggcgggaacatcggcggcggcggcggcagcagtggcggttgcatc
gtggacatgaggagcacggggcgcagtccggccaaggagcactacggcctgaccgttccc
attccgcagcgcacgcaggcggccaagcaggcctcgctgtgcgtcatcgacatcacggag
gacgccggcgcgcaccccagctcgcgggagagctcggaggccgtgtcggctctgctcgcg
tcccagaaggccgagcggtacacgcccgagcccagacacttggtgctgacccccacgcct
acggacctcaggaaaggggacaacgagccgccgcagcagcatcatcaacaacaacatcaa
catccacatcatcatcatcatcaacaacaacaacaacaacaacaacagcaccacctccac
cacccccaccacccccaccaccacttgcaccacatgcaccagccgcaggtggtgcgcagc
agccagggggtgaagctggagttcggccacctggaggtgatccagccgctgagcgccaag
agcgagtccgcggcggcgctggccgagcgggcggagcgggagaagctgtcggcgcagcag
tacgccgccatcgtgccctcgtgcatcaagagcgccgccatcgccgaggagacgcgccgg
ccccagcggccgagcccctcgccggacgccaccaagccgccgcctccccccccctccccc
ctccagggccgcctgcacggccaccccaaccgcaacccgtcgcccgagctccacaagccc
ctcctccaccaccaccacccgccaccgcaccaccatcaccaccagcaccaccagcaccac
gccagcctctccgccctggacgcgccggccaagtccaagtcgctggccgtgggcacgctg
gagtcgcccaagccgcggcccaacacgtctccggaagtttccaaacacaaaacggcacag
cggcaccccgggcaggacggcccgccgcacaacagcttcccgccgtcgtcgtcttcgtct
tcgtcttcgtcgtcttcgtcgttggcatcgttggcgtcgccctcgtctgggcgcggtggc
gtgtgcaagcgggagccgtctccctccccggcggggcccgtgcgctccagcttcaagccg
gtgcagggccgctgcgagctggccaagagcccgctgatcatcgacaagaacgagcacttc
accgtctaccgcgacccggcgctggtgcggcccgagtccgagccctccgcctcctcctcg
tcctcgtcggccgccgccgccgccgccgccgccgccgctaaccaccacgtggcgtacctg
cactcgcacctgcacccgctccacggctcccagcacgccacctgcctcacggccggcgcg
caccacccctcgcacctgctcgcgccgccgccggcctccatcaacccgcacgccgcgccg
ccctcccacgccatgcaccacccgcacctgatgcccggcgtgggcgtgggggtgggcgtg
ctgccctcctcactcctggggggccacgcgcgggtggactcgggggggctcagccagcac
ctggccatggcggcggccgcagcgcaggcacaggcacaggcacaggcacaggcacaggcg
caccaccacccgcaccagcacgcgcaccctcacgcgcaccagcaccagcagcagcagttc
ctctccccgcagcaccagggccccgccggggcgccctacaacctgtaccccatcatctgg
ccctaccccaacggcggaccccactcctacccgcccggcctcggcctgcccgtcagctcc
gacagcagtctgcggaggaacacgccgagcccttggcttcaccagcacccgccggtctcg
tcggccgacggcctcgcgctcctgagccacgtcccgggcagaccggccagcgccgacccc
caccggcccctcaagatcggctcccacgccagcccgccgctctgcaagagcgccggagag
ctccacaaagaggagctggagaagaaggccttcgccgaccacatgggtagcctagcaacg
gcccacctgaagcaggagccggaccgcagccgcacgccgacgggcaaggagctccatcac
cgcggctacctggaccctccgtccaaagcgccgcgcctggtcccgccgccggacgcctcg
gaacgcgccagcaagtacaaggaggagaaccggcgcatcctgcaggagagccgcgacgtg
gcgcccttcaccgccaagctgcggccgaacgagtgcgagcgcgagcccccgtacccccgc
atgcctcaccagccgctccccggctccggcgggtcaatagcgccccctggtggcgccccc
aaatcccacagtgcgccctcggcgggccccgtggatcgggacgcgtccgagcaccggccg
ccctcggcctcggagctgtacaagttcaagccgcagagcaactacttcaccacgctgtcc
aatagcgtggtgaacgagccgccgcgcctctacccctccaaggagctcaactccccgtgc
cactccttcttcgataaggtcgtggggaccccctcgtcctccccgagccccttgtccctc
ggctttgtcggcggcggtggtggtggtgtgacagggtcaggaggaggaggaggaggagga
ggaggaggagggggcaacagcggaggctcgaagtccctctcgaagcccccgccgcttatc
aagcaccagccggagggggagggtctggtgggcaagatcacggagcagctgtcccagcag
gcggccgctgcgctgcaccccattggctgccctcctcagggaggggcggagcctcgccgt
agccccgccctctcgccgccgggtcagctgcgcatgccggcgttgcaccgcgcgcccgtc
ttccacccgcccacccagcagacgctggaccagcgcaaggaggcggccaactacgggcgc
ctctcgccaccgacgctcacccccatccagcccgtctgcgtggccgggaagcttccggaa
cagcagaagccgcccacgctgctgcccgagctgcgggaggtgaagagcggcgggatggag
ctggccgggggggccggggagccctggcgggtcgggacggacgtcgccgggcacgagggg
ggacgagggggcgcgtggcacggcgagaagagccgcaccagcaagcctcagggcgccacg
gcgtcggttatcgtgcggccgtccacctgcatcaagtacgacgggggctcgtccgggatc
aaggcctccgcagccgccgcggcccgggagattaacgagatcgggaagccgttcgcggtc
aagtctcaggcggacggtctgaagctggcggagacgagggacatgacggggagggtcatc
ctccccaacaccaacctggaggacgcctgcgcgcagtacaggaagagcatgatccgcacg
tctcaggccggcccggccagccccgtggtggcgctggtcaactctgtgtgcaatacgcgg
accgaagtgaccacttcctccgcgacctccgctgccgcctttagcgtctttagccgcggc
ggtggctcggacctctgtttccccgctagcacgaacgctaactttaacgctaacgctcac
gcttacggcggcggcaggactgatggctccacgcccaggctgtggcctctggaggttcag
gagggtggggggggctccaggaccacgtcccccaacgacgcgctcccctcctccggcacg
gcctccccggcgctgcagcagcagcagcagcagcagcaggcgtaccccgggaacttccac
ctgaagaagcacaaggcagcgctggccgcggcacagtccaggggtctggggacccccgaa
aacgagcgcccgccgctcggcccctcgccccccggcgctccgatacaggacgccagctcg
gcagcggcagcaacagctgcttctgcggcgggggcacagccgcccgtgaacaacgtggcg
gctaaaggcggcggcgccgccatgcccaacgggcagtcgtcgacgccgccgccgcccccc
atccagcccaactaccacaagctgaagaaggcgtggctgacgcggcactcggaggaggac
cggaacaccaacccgcccgagaagcccggcggcagctcctcgtccgccgcgtccacgccc
acctccgagatcatcaagccctgcaccgtccacctgatcgcctccacctcctccacctcc
acctcctcctcctccggcgaggccaccgactccggcaaggagggcaaggaggccggctcc
gaggacggcggtagcggcggcggcagccagaagtcgagcccggaggaggaccggcggacg
cgacgcggcggctccaagcgggcgtacgagtcgggctcggagagcggcgaggactcggac
gccagcgaaggcaccaagatggcgcagcgggccaagcggcagcccaagcccaccttcaag
aagaagcagaacgacatgcagcgccgcaaggaggacgacgacaacaagcccaacggaata
ttccgcagcgcccgcgagaagaccaagctcaagctggccagcagcaatggcatcccgcgc
tcggtgctgaaggactggcgtaaggtgaagaagctgaagcagacgggggagtcgttcctg
caggacgactcgtgctctgagatcgggcccaacctgcagaagtgccgcgagtgccgcgtg
ctgcgcagcaagaagggggaggagccagcacactcgcccgtcttctgccgcttctactac
ttccgccggctctcgtacagcaagaacggcgtgatccgcatcgacggcttctcgtccccg
gaccagtacgacgacgaggcggtgagcctctgggctccggacatgtacgaggagaacgag
ctggacctggacacctccaagtacatcctcagctacatcggagacaagttctgccagctc
gtcaccaccgagaacacggcggccagctgggtcaagaaagatgctaagatagcgtggaag
cgtgcggtgcgcggcgtgagggagatgtgtgacgcgtgcgaggccacgctcttcaacatc
cactgggtctgccagaagtgcggcttcgtcgtctgcctggactgctacaaggccaaggag
aggaagagctccaaagacaaagagctctatgcctggctgaagtgtgtgaagggccaaccc
cacgaccacaagcacctgatgccaactcagatcatccctggaacggtgctgaccgacctg
gtgaatgccatgcacggtctgagggagaagtatggcatccgcacccactgtgtctgcgcc
gctagcaagcagacagcgctgttgggcaagctgccctccaccaacggagtctcccaggtg
ctgcagaatgtgttgaaccacagcaacaagatctcgctgtgtaagcccgagggcccgccc
acaaacgccacgcccaagctggagaccaatggcggcggagcaggaagtccggccagcgac
gcgggcagcgaccccaagctgaccccgcccgagtcccagtccccgctacacttcctggcc
gacctggcggagcagaagtcccgcgaggagaagaaagagaacaaggagtcggtgaagagt
gtgaaggaggaggtgggtgaggcggtggaggcgctgcactgcaaggccacgtctctggtg
tcggggggcagtgaacagggctccacgctgcgggacctgctgaccaccacggccggcaag
ctgcgcctgggctccaccgacgctggcatcgccttcgcccccgtctactccaccgccacg
cagacgggcaagacgggccgcagcgtgcccaacatcctggacgacatcatcgcctcggtg
gtggagaacaagatcccggcgagccgcggcgccaagctggcgctgaagcaggagcccgtc
gccgaggagaccaggggactcgagcgcaagccgtcgcggccggcggcggtgacgacgccg
acgatgatcccgatggcggacgagcccccggcggcggcggcggtgcagaagctgcaggcg
gacatcgcccactgctggctgtacgggcagaagatgctctggctcaaggaccaccgcaac
tcctgcaactggaggctcttcagagagtgctggaagcagggccagcctgtgctggtgtcc
ggcgttcacaagaagctgaatgccagcctgtggaaggccgagtccttcaaccaggagttt
gctgaccaccaaggggacctgctcaactgcaaagacagcgtcgtcatctccaactcaggc
atcaaagagttctgggatggttttgaggacctaacaaagcggcccaagtgcaaggacgga
gagcccatggtgtaccggctcaaggactggccgtcaggagaggagttcatggccctcatg
ccatccaggtatgatgacctgatgaagaacctgcccctcccggagtactcggaccctgaa
gggaacctcaacctggcgtcccatctgccctccttcttcgtgcggccggacctggggccc
cgcctgtgctgtgcatacggagtggccgcttcccaggagcaggacttcggcacggccaac
ctgcacgtggaggtgtccgacatcgtcagcgtgctagtctacgtgggcgtcgccaagggc
aacggcgtcctctccaaaacaggtgttctgaagcggctagaggaggaggatctggacgag
caggtgaagcgccggctgaaggactcgagcgagacgcccggggcgctgtggcacatctac
gtcagcaaggatgtggacaagatcaaagagttcctgcacaaggtggctaaggagcagggc
ggcgagatccctgcggagcaggacccgctgcgtgagcaaggctggtacctgacgcggaag
ctgcgtcagcgtctgctggaggagcacggggtgcagggctggaccgtagtgcagttcctg
ggggactccgtcctcatccccgccggcgccctgcaccaggtgcagaacttgcacagctgt
gtgcaggtcatcaacgacttcgtgtctccggaacacgtagcgcactcgttccgtctcacc
caggagctgcgcgcctcaaaagaggaaatcaactacgaagataagctacaggtcaagaac
atcctgtaccactgtgtgaagaacgctgtggctacactgaaacggtgctgttctgaagag
cagggggaagaggaggagaactcgtga
DBGET
integrated database retrieval system
