Sardina pilchardus (sardine): 134070769
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Entry
134070769 CDS
T10667
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134070769 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
spil01009
]
134070769 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spil04131
]
134070769 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
spil03029
]
134070769 (rb1cc1)
Protein phosphatases and associated proteins [BR:
spil01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134070769 (rb1cc1)
Membrane trafficking [BR:
spil04131
]
Autophagy
Autophagosome formation proteins
ULK complex
134070769 (rb1cc1)
Mitochondrial biogenesis [BR:
spil03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
134070769 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
134070769
NCBI-ProteinID:
XP_062383188
LinkDB
All DBs
Position
2:complement(31930071..31956413)
Genome browser
AA seq
1630 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVADLKHAIQVKYKIATQHQVLVVNGGECMVADRRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLSKFDSAYINYQR
DFEDIKIKLTKLGTAVSVMAKIPLLESLTRHSYRESLEKSSSPVQRPDEEEEDEDRSAQS
VTPSAADGLRKSHELPPAMGGASLQAADAPRGDGKMTDSSELKAALQEADSPEKAACTGI
SFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLGDCQDTIAKLDNQNMKAI
KGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMI
MLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLER
VRVVDALSTVPQMYCLAVVEVVRRKMFIRHYRAWANALVKDGKRFYEAEKAKRETFGKLF
RKSFLRNRLFRGLDSWPPLSFCTRKPRKFDFELPDISLEDLQYLKSCCPVEVQPFLRLAP
VPPSRVPTLCDFEPLNQHVQMLHQLVQAAQSVDEMSQTITDLLSEQRASCSQSAQRSSQF
PRSESTTGTTPTSSKTLSSLTIPPPTSQALPVPAPLEDLSPDSIDAHTFDFETIGHPSMD
PVLQQGSLDLDSLAESPESDFMSAVNEFVIEENLSSPNPISDPTSPDMMVESLYSSVINA
IDSKRILDTTTLERENSRMAALRLCADRYRAAAEESQSGLRSVRDDLHHFRGLVAREQRD
FGFALKTVTVEVREVVGRLRLCHEEEVREGHRAALDELRRGHEGEVQTLTEELEANRGIV
RDVQRAMLELEGRIERKEKESAQLEGDRERASEELRASHQQGLQELERQLSERAEEIKAA
LASRDELTGQLSALQRDADRCREEARQEAQEAERERLREQEEALGQRHGAALEAERQERR
DAVERLAQEHQAALQGQQELHGRQLEERAERLRELEERVQELADARCKLEVEMALKEAET
EDARLQSEEARSRREEELEARVEAQAAELRRQAEELERRLQRRGEEHELGLAELRALLRR
EKDHCISELVERHEEELAALRQAADEARREADHRAQALRDERDEQAEALRADAEERERQA
EAQLGDLQAENALLAERCQHGQQQEAEERAEERAEAVKAALADALRDFELQKEELEKRLL
GKIQVLETQLQERQSSDRVSFSEEPSEGSREPTGAAVSLDTGLQEKLREENIDLLARLEQ
LEHRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINELTEKLRKVTQQQEKDKGLI
ETLSEDRASMLQEKKHLEEELNRLRSGVLVSSAFFSPGAAAGAVGAASSSQALAEPAGAV
GGEMPLVLQEPDPERLASVACLRDDERVDPAVDASMMATQFFCFSDNPLLLSEEKQRILI
LERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLF
TVGPTLYFLHSESLNALDLKPAMGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYR
VKAVPWNKKV
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgtttcaagtcaacaatggaagcacacttacttttgatactgaactt
gccgtccaaacggtggctgatctcaaacatgccatccaggttaaatacaagattgcaacc
cagcaccaggtcctggtggtcaatggaggggagtgcatggttgcagatcgacgggtctgc
agctacagtgcaggcactgataccaaccccatcttcctgttcaataaggagatgatttta
tgtgaccgagcccccaccatccccaagacaaccttctctatcgagaacgaaatggagctg
aaagtggaggagtcccttatgatgccagcagtctttcacaccgttgcctcacgaacacaa
ctcgcagtggaaatgtatgaagttgccaagaaactttgctccttctgtgaacgcctggtt
catgatgaacatctgcaacaccaaggctgggctgccatcatggccaacctggatgactgt
acgctgtcctatcaaaaattgctatcgaagtttgactcagcctacattaactatcagcgg
gactttgaggacatcaaaataaaacttaccaaactggggacggccgtatcagtcatggcc
aagattcctctgctggagagcttgacccgccacagctaccgcgagagcctggagaagtcc
agctctcccgtgcagaggcccgatgaggaggaggaagatgaggatcgctcggcccagtcg
gtcacgcccagcgctgccgacgggctgaggaagagccacgaactgccccccgccatgggc
ggagcttctctccaggcggctgatgccccccgcggcgatggcaagatgacggacagcagc
gagctcaaggcggcactgcaagaggcggactcgcccgaaaaggcagcctgcaccgggatc
tcctttaacgtcaccctcctggactggatcaacgtccaggaccgacctaatgatgtagag
tcggtggtgcggaagtgcttcgattccatcaacaggttggacccacgtatcattcagcca
tttttaggagattgccaggacaccattgccaaacttgataatcagaacatgaaggccatc
aagggactggaggacagactgtatgcccttgaccaaatgattgcaagctgtaaaaagtta
gtcaatgaacagaaggaacttgctcagggatttctggccaatcagaagagggctgaaaac
ctgaaggacacctctgtgctgcctgacctgtgtctgagtcatgcaaaccagctaatgatc
atgctgaccaaccacaggaagctgctggatatcaaacagaagtgcaccactgccaaacag
gaactcgctaacaacttacaagtccgtctcaaatggtgctgctatgtgatgctgcacgcg
gaccaggacggggagaagctgcaggcgctgctgcggctgttgactgagctgctggagaga
gtgcgcgtggtggacgcgctcagcaccgtcccccagatgtattgcctggccgtggtggag
gtggtcaggaggaagatgttcatcagacactacagagcgtgggcaaatgcacttgtgaag
gatgggaaacgattctatgaagcagagaaggccaaaagggaaacctttgggaagctattc
aggaagtcatttcttagaaatcgtttgtttcggggacttgattcatggcctccattgtct
ttttgcactcgaaagcctcgcaagtttgactttgagcttccagacatctctcttgaggac
ctgcagtatctaaagtcttgctgtcctgtcgaggttcagcctttcctcagacttgctcct
gttcctccctccagggttcctacactttgcgactttgagcctttgaatcagcatgttcag
atgcttcatcagttggtccaggctgcgcaaagtgtagatgagatgtctcaaaccatcact
gacttactaagcgaacaaagggcttcctgcagtcagagtgctcagaggtcatcacagttc
ccccggtcagaaagcacaacagggacgacgcctacctcctccaaaacactatcctccctc
accatcccaccccccaccagccaggccctgcccgtccctgcgcccctcgaagacctgtcc
cccgacagcatcgacgcccatacctttgacttcgagaccatcgggcaccccagcatggac
cccgtcctgcagcaaggctccctggacctggactccctggccgagagccccgagtcggac
ttcatgtcggcggtgaacgagtttgtgatcgaggagaacctgtcgtcgccgaaccccatc
agcgaccccaccagccccgacatgatggtggagtcgctctactcgtcggtcatcaacgcc
atcgacagcaagcgcatcctggacaccaccacgctggagcgggagaactcgcggatggcc
gcgctgcgcctgtgcgccgaccgctaccgggcggcggccgaggagtcccagagcggcctg
cgcagcgtccgggacgacctgcaccacttccgcggcctggtggcccgcgagcagcgggac
ttcggcttcgccctcaagacggtgacggtggaggtgcgcgaggtggtgggccgcctgcgg
ctgtgccacgaggaggaggtgcgcgagggccaccgcgcggcgctggacgagctgcggcgc
gggcacgagggggaggtgcagacgctcaccgaggagctggaggccaaccgcggcatcgtg
cgcgacgtccagcgggccatgctggagctggagggccgcatcgagcgcaaggagaaggag
agcgcccagctggagggcgaccgggagcgggcgtccgaggagctccgcgcctcccaccag
cagggcctccaggagctggagcgccagctctccgagcgggccgaggagatcaaagcggcc
ctggcctcccgcgacgagctgaccggccagctgagcgccctccagcgggacgcggaccgc
tgccgggaggaggcgcgccaggaggcgcaggaggccgagcgggagcgcctgcgggagcag
gaggaggccctgggccagcggcacggcgccgccctggaggccgagcggcaggagcgccgg
gacgccgtggagcgcctggcccaggagcaccaggccgcgctgcagggccagcaggagctc
cacggccggcagctggaggagcgggccgagcgcctgcgggagctggaggagcgcgtccag
gagctggccgacgcccgctgcaagctggaggtggagatggcgctcaaggaggccgagacg
gaggacgcgcggctccagagcgaggaggcgcgctcccggcgcgaggaggagctggaggcc
cgcgtggaggcgcaggcggcggagctgcggcggcaggccgaggagctggagcggcggctg
cagcggcgcggcgaggagcacgagctgggcctggccgagctgcgcgccctcctgcgccgc
gagaaggaccactgcatctcggagctggtggagcgccacgaggaggagctggccgccctg
cggcaggcggccgacgaggcccggcgcgaggccgaccaccgggcacaggcgctgcgggac
gagcgcgacgagcaggccgaggcactgagggcggacgccgaggagcgggagcggcaggcg
gaggcgcagctcggcgacctgcaggcggagaacgccctcctggccgagcggtgccagcac
gggcagcagcaggaggcggaggagcgggcggaggagagggccgaggccgtcaaggcggcg
ctggccgatgccttaagagactttgaactccagaaggaggagctggagaagagactgtta
ggaaaaatacaagtacttgaaacccagctccaagagcgacaatcctctgacagggtgtca
ttctcagaggagccatcggagggcagcagagagccgacgggagcagcagtgtctctggac
acgggtctgcaggagaagctgagggaggagaacatagacctgctggccagactggagcag
ctcgagcaccgcaagaacgaggagatgcagaacctgaagacctcgctcatcgcagaacag
cagacaaatttcaacactgtcctgacgcgcgagaaactgaagaaagagcagatcatcaac
gagctgacggagaagctccggaaggtcacccagcagcaggagaaagacaaaggcctgatc
gagacgctgtcggaggaccgtgcctccatgctgcaggagaagaagcacctggaggaggag
ctgaaccggctgcgcagcggcgtgctcgtctcctcggccttcttcagccccggcgcggcg
gcgggcgcggtgggcgcggcctcctccagccaagctctcgcggaacccgccggcgccgtg
ggcggagagatgcccctcgtcctccaggaacccgaccccgagaggctggcctcggtcgcc
tgtctccgagacgacgagagggtggaccctgccgtggatgccagcatgatggccacgcag
tttttttgtttcagcgataatccattgctactgtcggaggagaagcaacggatcctcata
ttagaacggactctacacatgaaggaggaggagaacaagaggctgagtcagagactgatg
tctcagagcatgtcgtcggtgtcttcaagacattcagagaagattgctattcgagatttc
caggtaggagacttggtgctgatcatcttggacgagcgccatgacaactacgtcctcttt
actgtgggtcccacgctctacttcctccactcagagtccctcaatgcactggacctcaaa
ccagcgatgggtgcctccagaagaccttgggttcttggaaaagttatggaaaaagagtac
tgtcaagcaaagaaggctcagaatcggttcaaagttcctctcggcaccaaattctacaga
gtgaaagcagtgccatggaacaagaaagtgtag
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integrated database retrieval system
