KEGG   Sardina pilchardus (sardine): 134071066
Entry
134071066         CDS       T10667                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil04115  p53 signaling pathway
spil04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    134071066 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    134071066 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:spil04121]
    134071066 (cop1)
Enzymes [BR:spil01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     134071066 (cop1)
Ubiquitin system [BR:spil04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    134071066 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     134071066 (cop1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML zf-RING_UBOX Beta-prop_DCAF4 zf-C3HC4_3 Beta-prop_WDR90_POC16_2nd zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 WD40_like Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-rbx1 WDR90_beta-prop_4th UvrD-helicase zf-RING_10 zf_C2H2_10 Sina_RING Tma16
Other DBs
NCBI-GeneID: 134071066
NCBI-ProteinID: XP_062383629
LinkDB
Position
2:complement(33012999..33024238)
AA seq 713 aa
MSGSRQPLTGGGSGSGPGTSSSISPASNTSAVSAVSNATNGNNSGNAVSSRTMGTGGEGL
PVPSLGVQSQRGNNLTPLSGRPGSSSGGSCSKKRHLQTPLYNGLINSYEDKSNDFVCPIC
FEMIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQR
CEEKRLKRDHPNGHRWPFSQDVLGTDQESLDLANVNYMLELFLQKKKQLEAESQAAQRQI
LMEFLQEARRNKREQLDQLQKEVNFLEEDIKRVEEMSGLHSPSSDMDPNLDSTVPQFEAP
SPAPSSIIESTDYNQPPGFGGSSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMSR
ITDDSRGVNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAI
AGVTKKIKVYEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILW
DGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANV
CCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSAST
DSQLKLWNVNKPYCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTF
KFDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2142 nt   +upstreamnt  +downstreamnt
atgtcaggtagccgtcagccgctcactggtggagggtcaggctcagggcctggaacaagc
agcagcattagccctgccagtaacaccagtgcagtcagtgctgtgagcaatgctacaaac
gggaacaattctggaaatgcagtatcctcacgaactatgggaacaggaggcgaaggattg
cctgtaccttcacttggggtccaatctcaaaggggcaacaatttaacaccgcttagtggc
agacctggatcttcttctggaggaagctgcagtaaaaaacgacatctacaaactcccctt
tataatggtcttataaattcttatgaagataagagcaatgactttgtatgtcccatctgt
tttgagatgatagaggaagctcacatgacaaagtgtggtcatagtttctgttacaagtgt
atccgtcagagcttggaagacagcaacaggtgcccaaaatgtaactacattatcgataat
gtggatcagctctatccaaactttcttgtaaatgagctcattctgaagcagaagcagcgc
tgtgaggagaagcgactcaagagagaccatcctaatggtcatagatggccgttttcccaa
gatgttctgggcacagatcaagaaagtctggatttggcaaacgtcaactacatgctggag
ttatttctgcagaagaagaagcagctggaggcggaatcgcaagctgctcagcgccaaatc
ttaatggaatttcttcaggaggcaagacgaaataagagagagcaactagaccagttacaa
aaggaggtcaactttttggaagaagacatcaaacgagttgaggaaatgagtggactacat
tcaccatcaagtgacatggaccccaatttggacagcacagttcctcagtttgaagcccct
tctcctgcacccagtagtattatagagtccacagattataatcaacctccgggatttggc
ggaagctctcaggggaaaagacaaacgtggtataatagcacactggcgtcacgccgaaaa
agactcactgctcactttgaagacttggaacaatgctacttctccaataggatgtctcga
ataaccgatgacagtaggggtgtaaatcagctggacgatttcatggagtgtctctcgaaa
ttcacacggtacaactctgtccggcctctggccaccctctcctatgcaagtgacctctac
aacggctccagtattgtctccagcatcgagtttgaccgcgactgtgattacttcgccatc
gccggcgtcaccaagaaaattaaggtctacgagtacggcactgtgatccaggatgccgtg
gacatccactaccccgtcaacgagatgacgtgcaactccaaaattagctgtatcagctgg
agtagctaccacaagaatctgttggcaagcagcgactacgagggaacggtcatcctctgg
gatggcttcacaggtcaaaggtcaaaagtctaccaggagcacgagaagaggtgttggagt
gtggatttcaatctgatggaccctaaacttctggcttccggctcagatgatgcgaaagtg
aagttatggtctaccaaccttgacaactctgtggccagcatcgaggccaaggcaaatgta
tgctgtgttaagttcagtcccacctcgaggtatcaccttgcctttggctgtgcagaccat
tgtgtccactactatgacctgcggaacaccaagcaacccatcatggtcttcaagggacac
agaaaagctgtttcttatgcgaaatttgtcaacggggaggaaattgtgtctgcttccacg
gacagtcaactgaagctgtggaacgtcaacaagccctactgcctgcgctccttcaaaggc
cacatcaacgagaagaactttgtgggactggcctccaacggagactacgtggcgtgtgga
agcgagaacaactccctttatctctactacaaagggctgtccaaaacgttgctgactttc
aagttcgacaccgtgaagagtgtgctggacaaagacaagaaggaggacgacaccaacgag
tttgtcagcgccgtgtgctggagggcgctgccagatggggagtctaacgtgctgatcgct
gccaacagtcaaggaacaataaaggtacttgagcttgtttga

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