Sardina pilchardus (sardine): 134071200
Help
Entry
134071200 CDS
T10667
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134071200 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134071200 (smg7)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134071200 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
134071200 (smg7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
134071200
NCBI-ProteinID:
XP_062383811
LinkDB
All DBs
Position
2:33648865..33668664
Genome browser
AA seq
1191 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSSTSSIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLSKSLDKLNTLREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDFANEPDEQSYSSDEQISWFQLLGLFMSFLGVMCSRVLLNKSREEIMGECPL
PAIKVSLDWLKLRPTVFTESVVDKRQYIWPWLVSILNSFQLKEDELSCVSATPLPEEFEL
QGFLALRPALRTLDFSKGHQGIAVGKDGLVVRSRHQRLINLGKWVADNQPGLIQYSVSDE
LLLFITDIPERVIEEPQEKDMPVLQESSNGEQMSHEGSLGLRSVLSAGKTQNSTLDGSDR
PVVTFKENIKPREQSREQGQGQGQGQGRGQHQRDGGGGGGKERPGYGKGNGAAGKNEQKK
EGKRKSEVKKNSHDKAPDAGKQVKTQAEVRKTPVSEARKTPVTQSQTSGSSQFIPIHHPG
AFPPLPSRAGFPPPPYVIPPPVAFSMSPGFTFPTSVSVPAPFLQPATHAQTASQVQSGKP
SHIPYSQQRPSGPGAMSQGPPQAPQTQPPPQQPSQQALQQQSVQLQVQQQQQQQQSPTKQ
AAQLGKSPPHHPGMQQYMSVAEQSGQMWSQAPAQPQGPMPKMPMQMPVKQPPPPSFFMPP
QDPLKLFEHSMSPNVPMQPPSAVMDKKPKFPEVKVQPDFYWESLYRSGMAERMAKRQPGM
FCPDQENVSRGPPYEDNKSSPLLPPDLLKTLVDFEEEEELVFAKPPGFYQAVAGPLSSAP
GRNMFLPNQSRMESAEVMGQSSLLLTRAGFPIQENSYQNNSIFSEAYGKHPHPPTPKPDV
PMMHQEHSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHSHPSLPFSN
FGPIGTPDSRDRRATDRWKAEKTGVSGFGLDYLPTASSSTAPETSWHQGGPTSSWATQDM
PMEDSSTNLLDSLKSIWSSSMMQPGPSALEQLLMQQKQKQQRGHGPMNPPH
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatatttacgacaggcagaagccctgaaggctgacatgaccgat
tcaaagcttggtgccgccgaggtctggacgtcacgacaggcacttcaggatttgtaccag
aaaatgctggtgacagacctggagtatgcactggataaaaaagtggaacaagatctctgg
aaccatgcttttaagaaccagataaccacactccagagtcaagccaagaacagagccaac
cccaaccggagtgaagtgcaagcaaacctctcgctgtttcttgaggcagctagtggattc
tacacacagttgttgcaagagctctgcacagttttcaatgtggacttgccatgtcgtgtt
aaatcatctcagctgggtatcatcagcaataaacagagcagcaccagcagcatcgtgaag
ccccaacccagctcctgctcctacatctgccagcactgtcttgttcatctgggagacatt
gcacgctaccgcaatcaaaccagccaggcagaatcctactacagacatgcagcccagctc
gttccctcaaatggccagccctacaatcagctcgccatcctggcctcctccaaaggagac
cacctcaccaccatcttctactactgccggagcatcgctgtgaagttccctttccctgca
gcatccaccaacctgcagaaagcgctctccaaagctctcgagagtcgtgatgaggtgaag
accaagtggagcgtctccgatttcattaaggctttcatcaagttccacggtcatgtgtac
cttagcaagagtctggacaagctcaacaccctgagggagaagctggaggagcagtttcag
cgattgattctccagaaagcgttcagctcccaacagctggtccacatcacagtgattaac
ctgtttgagctgcaccacctgcgggacttcgccaacgagccggacgagcagagctacagc
tcagacgagcagatcagctggttccagctcctgggcctcttcatgtctttcctgggagtg
atgtgcagccgcgtgttactcaacaagagcagagaggagatcatgggcgagtgtcctctg
ccggccatcaaagtgtccctggactggctcaagctgcgccccactgtcttcacagagagc
gtcgtggacaagagacagtacatctggccgtggcttgtgtctattctcaacagcttccag
ctcaaggaagatgaattatcctgtgtatcagccacccctctccctgaagagttcgagctg
caaggctttttggccctccgtcctgccttaaggacactggacttctccaaagggcaccag
ggcattgcagtcggaaaggatggcctagtggtgcgctctcgccatcagcgcctcatcaac
ctgggcaagtgggtagcagacaaccagcctgggcttatccagtacagtgtgagcgatgaa
ctgctgctcttcatcaccgacatcccagagagagtgatcgaggagccccaggagaaggac
atgcccgtcctgcaggagtcgtccaacggcgagcagatgtcccacgagggctctctgggc
ctccggtcggtcctgtcggccgggaagacccagaacagcacgctggacggcagcgacagg
cctgtggtcaccttcaaggagaacatcaagccccgtgagcagagtcgggagcagggccag
gggcaggggcaggggcagggccgtggccagcaccagagggacggcggtggcggcggcggc
aaggagcgccccggctacggcaagggcaacggcgccgccggcaagaacgagcagaagaag
gaaggcaagcggaagagcgaggtgaagaagaacagccacgacaaagcgcccgatgctggg
aaacaggtgaagacgcaggctgaagtgaggaagactccagtgtccgaggcgaggaagacc
cccgtcacccagagccagaccagcggctcctcacagttcatccccatccatcacccaggg
gccttcccaccgctgcccagccgagcaggtttccctccccctccgtacgtcatccctcca
cccgtggccttctccatgagccccggcttcactttccccaccagtgtctctgtgcctgcg
cctttcctccagcctgccactcacgcccaaacggccagccaggtgcagtcggggaaaccc
tcacacattccctacagccagcagcggccctcgggccccggggccatgagccaggggccg
ccccaggccccgcagacccagccgcctccacagcagccttcccagcaggccttgcagcag
cagtccgtgcagctccaggtgcagcagcaacagcagcagcagcagtcgcccaccaagcag
gctgcccagctgggcaagagcccaccgcaccaccccggcatgcagcagtacatgtcggtg
gcggagcagagcgggcagatgtggagccaggcgccggcgcagcctcagggccccatgccc
aagatgcccatgcagatgccggtcaagcagccgccgccgccgtccttcttcatgcccccc
caggacccgctcaagctctttgagcactccatgtcccccaacgtccccatgcagcctccc
agcgccgtcatggacaagaagcccaagttccccgaggtcaaggtgcagccggacttctac
tgggagtcgctgtaccgctccggcatggccgaacgcatggccaagcgccagccggggatg
ttctgccccgaccaggagaacgtctccaggggcccaccgtatgaggacaacaagagctcc
cctcttcttcctcccgacctgctaaaaacactggtggactttgaggaggaagaggagctg
gtctttgctaagcctcctggcttctaccaggccgtggctggccctcttagctctgctcct
gggagaaacatgtttttgccaaatcagtctaggatggagagtgctgaggtgatgggccaa
tcctccttactgctaactcgtgctgggtttcccatccaggagaactcctatcagaacaac
agcattttcagcgaggcctacgggaagcacccacacccacccacacccaagcctgacgtt
cccatgatgcaccaggagcactcgctctattccctgtttgaaggaactccctggtccccc
tccctgcctgctagctctgaccactcaacgcctgccagccagtccccccactcctccaac
cccagcagcctgccctcctccccacccacacacagccacccctcgctgcccttctccaac
tttgggccaatcggcacgcccgacagccgagaccggagagccaccgaccgctggaaggca
gagaagactggcgtgagtggctttgggctggactacctgcccacagcctcgtcctccaca
gcccccgaaaccagctggcaccagggcggtcctactagcagctgggccacccaggacatg
cccatggaggattcctccactaacctgctggacagcctcaagtccatctggtcgagctcc
atgatgcagcccgggccgtctgcgctggagcagctgctgatgcagcagaagcagaagcag
cagcgcggccacggccccatgaacccgccgcactga
DBGET
integrated database retrieval system
