Sardina pilchardus (sardine): 134071451
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Entry
134071451 CDS
T10667
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04148
Efferocytosis
Brite
Membrane trafficking [BR:
spil04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
134071451 (tgfbrap1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
Beta-prop_IFT140_2nd
Serglycin
Motif
Other DBs
NCBI-GeneID:
134071451
NCBI-ProteinID:
XP_062384153
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All DBs
Position
23:2029978..2045717
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AA seq
895 aa
AA seq
DB search
MSVKAFELVPVVERELLMADKARVTIECLECCGKYLYVGTNDGFIHHFLLDQQTDAKGRP
HFLSQKLQQKHLGLKRGVAELKAASALERLIVLCDATVYVHDMLSLEPVPPSSGGAKIKG
ALSFCVNENPVSADPFCVELGVISSRRRAVQIYTYTVREERVQLVKELATAGQPCALSLD
GYFLCLALASQYVILNYSTGASQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFANAE
GVSQRAPVNWSESVIGAAVCFPYVVALDEGFVTVHSMLDQQLKQTLSFRDGHILQDFEGK
LVLSSTKAVYMLVPLPLERQIQGLLAGNRVEEALTLTEGAQRNIPKDRFQILHKRILQQA
GFIQFGQLQFLEAKEHFRKGQLDVRELISLYPLLLPAASSFARCHPPLHPFADLNQLTQG
DQEKARRCKLFLISYLHEVRSGSSGSGSGSGTGTGTGDATNGFREEVDTALLKLYAEADH
ESLLDLLASDNACLLADSAPWLEKHHKYFALGLLYHYNGQDSSAVQLWTRVVDGELQDST
RADLYEYVVDFLSFCPDTDLVWKHADWALNRDQTIGVQIFTKRPVEGGGQGVRINPEDVL
TYLQKQKHSHALLLYLEHLVLEQHVQKEKFHTHLALLYTERVLTLLSQPSCSDTVLAQAR
ATLQRLLKESHLYRVQLLLGKMEGVDALLAEQATLRGRLGEHERALHILVHQLHDHAAAE
SYCRWASSPPRDPPSSPQDPSLGPRLFHLLLDAYLDADVPGGADNVAAVDLLNRHGNMFE
ASRVLAALPEGWSLQLLRPFLTAAVRKSAHAQRTAQLAAGLARAENLQLLHDRLLQRGGP
VLVSEKKGCQLCHNTFSAPDCVCLPGGVPVHTHCAAQRLRDSPAKPRLDNGSDHT
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcctttgagctggtgccggtggtggagcgcgagctcctgatggcggac
aaggcgcgcgtcaccatcgagtgcctggagtgctgcggcaagtacctgtacgtgggcacc
aacgacggcttcatccaccacttcctgctggaccagcagacggacgccaagggccgcccg
cacttcctgtcccagaagctgcagcagaagcacctggggctgaagaggggcgtggccgag
ctgaaggcggcgtccgcgctggagcggctcatcgtgctgtgcgacgccaccgtctacgtg
cacgacatgctctcgctggagccggtgccgccgtcgtcgggcggcgccaagatcaagggc
gcgctgtccttctgcgtcaacgagaaccccgtgagcgccgacccgttctgcgtggagctg
ggcgtgatctcgtcgcggcggcgcgccgtgcagatctacacgtacaccgtgcgcgaggag
cgcgtgcagctggtcaaggagctggccaccgcggggcagccctgcgccctcagcctggac
ggctacttcctgtgtctggcgctggcctcgcagtacgtcatcctcaactacagcacgggc
gcctcgcaggacctgttcccctacgacagcgaggagcgcaagcccatcgtcaagcggatc
ggacgcgaggagttcctattggctgcccctgggggactgggtatgtttgccaatgcggag
ggcgtgtcccagcgggcgccggtgaactggtcggagagcgtgatcggggcggccgtgtgc
ttcccgtacgtggtggcgctggacgagggcttcgtgaccgtgcacagcatgctggaccag
cagctcaagcagaccctctccttcagggacggacacatactgcaggactttgaaggcaag
ctggtgttgtcgtccacgaaggcggtgtacatgttggtgccgttgcccctggagaggcag
atccagggcctgctggcgggcaatagagtggaggaggcgctcaccctgacggaaggagcg
cagagaaacatacccaaagacaggttccagattttgcacaaaagaattctacagcaagca
ggattcatccagtttggacagcttcagtttttagaagcaaaagaacattttaggaaaggt
cagctggacgtgcgggagctcatctctctgtacccgctgctgctgcccgccgcctcgtcc
ttcgcccgctgccacccgccgctgcacccgttcgccgacctcaaccagctgacgcagggc
gaccaggagaaggcgcggcgctgcaagctcttcctcatcagctacctgcacgaggtgcgc
agcggcagcagcggcagcggcagcggcagcggcaccggcaccggcaccggcgacgccacc
aacggcttccgcgaggaagtggacacggcgctgctcaagctctacgccgaggccgaccac
gagagcctcctggacctgctggcgtccgacaacgcctgcctgctcgccgacagcgccccc
tggctggagaaacatcacaagtattttgcgttgggacttctgtatcactacaatggccaa
gactcttcagctgtacagctgtggacgcgggtggtggacggggagctgcaggacagcacg
cgggcggacctgtacgagtacgtggtggacttcctcagcttctgccccgacaccgacctg
gtgtggaagcatgcagactgggccttgaacagagaccagacgataggggtgcagatcttc
actaagcggccggtggaggggggagggcagggcgtgcggatcaaccccgaggatgtgctc
acgtacctgcagaagcagaagcacagccacgccctgctcctctacctggaacacctggtg
ctggagcagcacgtgcagaaagagaagttccacacacacctggcgctgctgtacactgag
cgcgtgctgacgctgctctctcagccgtcctgctcagacacggtcctggcccaggcccgg
gccacactccagcgactgctcaaggagtcccacctctaccgcgtccagctcctactgggt
aagatggagggcgtggacgcgctgctggcggagcaggccactctgcgcgggcgtctgggc
gaacacgagcgagcgctccacatcctggtgcaccagctgcacgaccacgccgcggccgag
tcctactgccgctgggcctcgtcccccccccgggaccccccctcgtccccccaggacccc
tcgctgggcccgcggctcttccacctgctgctggacgcctacctggatgccgatgtgccg
ggcggggcggacaacgtggccgccgtggacctgctcaatcgccacggcaacatgtttgag
gcgtcgcgcgtgctggcggcgctgcccgagggctggtcactgcagctgctccgccccttc
ctgaccgccgccgtccgcaagagcgcccacgcacagcgcaccgcccagctggccgccgga
ctggcccgcgctgagaacctccagctgctgcacgacaggctgttgcagcgcggcgggccg
gtgttggtgtcggagaagaaggggtgccagctgtgccacaacaccttcagcgcgcccgac
tgcgtgtgcctgcccggcggggtgcccgtccacacacactgcgccgcccagcgcctgcgg
gactcgcccgccaaaccacgcctggacaacggcagcgaccacacatga
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