Sardina pilchardus (sardine): 134071468
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Entry
134071468 CDS
T10667
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134071468
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
134071468
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
UBA_N4BP1_C
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
134071468
NCBI-ProteinID:
XP_062384179
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All DBs
Position
23:27714392..27733119
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AA seq
943 aa
AA seq
DB search
MGLKDHLDDGTGHILDLGIDLDYLQVKATARDRPPSEADAHTKMEPGPSEEAEGRLPAGT
SLGSSSGIGSTPADSEESTDSEAEQINLPPRSAHPQLCRSPCLDLESASPPGTSVSEDAD
SVGSLRAYQNKMEFALKLGYQEDLIRLVLSKLGPEALINDILGELVKLGSKPESEQGGGS
AASQSRSSSMAPSSSSCSSSGSTTSSSGCGFSDSTESRQSDSPSQMDSLDDKDNLRPIVV
DGSNVAMSHGNKEVFSCQGIQLAVDWFLERGHRDITVFVPAWRKEQSRPDALITDQEFLR
RLEKDKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLANEKPEWKKFI
DERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPIIPEHKKQPCPYGKKCTYGHKCKF
YHPERGTQPQRSVADELRASAKSCSAKVPVESGLVKSHSMPGSQRPAEAKRAQAKRQSDP
SVRTLSYSDVEERLTSRSPKLDPSHGKGSATMLPAPGGPPMGHGHGHGHGQDPTREYPHP
SGKPHSGGMLASQYPMCESPDLSYCSLVRAYSGLRIAVPPRSPERRMLPDALLSDCSSEG
SASCGSSSTDSYGGVLGPAGERSCMSSPDLLSDDAAAPLRCPHHHLGQQQQQQQPPPHHH
HHHHHHRGSAQYPPPLPPPQTPPQHHLHQGHVLAPVPVPGYHHHHHHHHQQQQQQVPAPQ
SLTPRGYSFSLDEPPDSPLFTKHSRPYLSPQLQHQTVAARSSCPGDCPPLSGGSHPQSSP
LGRGLASTRADSVSDSRLYESSPLLPRKALYMGQERLGGWDPYYLQPPPPQAPPQPCYEP
FTFQGLQESREQAWRAPWGRGPSQPPPPHPSHSPQPQPMGSLNPPEPPPISRHQEVRQKV
FKNLCNIFPTELVRMVMGRYPHVTDAQQLAAAILAEKSQPGAY
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaaggaccatctagatgatggaacaggccacatccttgacctcgggatcgat
ctggactacctgcaggtgaaggctactgccagagaccggccaccctccgaagcggatgcc
cataccaaaatggagcctggcccgtcggaagaggccgagggcaggctaccagccggaacg
agcctgggcagcagtagcggcattggatccacacccgccgactccgaggagagcaccgac
agcgaggcagagcagatcaacctcccgccccgctctgcccatccccaactctgccgctca
ccgtgtctggacctggagtctgcctcacctccgggcacttccgtctctgaagacgccgac
tccgtgggaagcctgcgcgcctaccagaacaagatggaatttgcattgaagctcggctac
caggaggacctcattcggctggtgctcagcaaattagggcctgaggctctgattaacgac
attctcggtgagctcgtaaagctggggagcaagccagaaagcgagcagggcggtggatcg
gcagcgtctcagtccaggtcttcatcgatggcaccctcatcctcctcctgctcgtcctca
ggatccaccacctcttcatcaggctgtgggttctccgactccactgagtcccgtcagtcg
gattctccctcacagatggactctctggatgacaaggacaacctgaggcccattgtggtt
gacggcagcaatgttgccatgagccatggcaacaaggaggtcttctcatgccaaggcatc
cagcttgcagttgactggttcctggagcgaggacaccgtgacatcactgtgtttgtccca
gcttggaggaaggagcagtcgcggcctgatgctctcatcacagaccaagagtttctccgc
cggctggagaaggacaagatccttgtgttcacgccctcacgacgggtgcaaggtcgtagg
gtggtctgctacgatgaccgcttcattgtcaagctagcctacgagtccgacggcatcata
gtctccaacgacaactaccgggacttagccaatgagaagccagagtggaagaagttcatc
gatgagcggctgctaatgtattcattcgtcaatgacaaattcatgcctcctgatgaccct
ttgggtcgacatggcccaagtttggagaactttctgcgaaagcgaccaatcattccagaa
cacaagaagcagccctgcccttacgggaagaagtgcacgtacgggcacaagtgtaagttt
tatcacccagagcgtggcacccagccccagcgctcggtggcagacgagctccgcgccagc
gccaagagctgctcggccaaggtgcccgtggagtcaggcctggtgaagagccacagcatg
ccgggcagccagcggcccgccgaggccaagcgagcgcaggccaagcgccagtccgacccc
agcgtccgcacgctgtcctacagcgacgtggaggagaggctgaccagccgctcgccgaaa
ctcgacccgtcccacggcaaagggagcgccaccatgctgcccgctcccggcgggccaccc
atgggccacgggcacgggcacggacacgggcaggacccgacccgggagtacccccacccg
tcggggaagcctcactcgggcggcatgctggcgtcccagtaccctatgtgcgagtccccg
gacctgagctactgctcgctggtgcgcgcctactcgggcctgaggatcgccgtgcccccg
cgcagccccgagcgccgcatgctgcccgacgcgctcctgtcggactgcagcagcgagggc
agcgccagctgcggcagcagcagcacggactcgtacggcggcgtgctgggccccgcgggc
gagcgctcgtgcatgagctcgcctgacctgctgtcggacgacgccgccgcccccctgcgc
tgcccacaccaccacctcggccagcagcagcagcagcagcagccaccaccgcaccaccac
caccaccaccaccaccaccggggcagtgcccagtacccgccccctctgccgccgcctcag
acgccccctcagcaccacctgcatcagggccacgtgctcgcgcccgtcccggtgccaggc
taccaccaccaccaccaccaccatcaccagcagcagcagcagcaggtgcccgcgccacag
agcctgacgccacgcgggtacagcttcagcctggacgagcctcccgactcgcccctcttc
accaagcactcgcgaccctacctgtcgccgcagctccagcaccaaaccgtggccgcccgc
tccagctgccctggggactgtccgcccctgtcgggcggctcgcacccccagagctcgccc
ctgggccggggactggcctccacgcgggccgacagcgtttcggactcccgcctgtacgag
agctcacccctgctgccccgcaaggccctctacatgggccaggagcgtctgggcgggtgg
gacccctactacctgcagccgcccccgcctcaggcccctcctcagccctgctacgagccc
ttcaccttccagggcctccaggagagccgcgagcaggcctggagggcaccgtgggggcga
ggccccagccagcctcctcctcctcaccccagccactccccccagcctcagcctatgggc
tccctcaaccctcccgagcctccccccatcagtcggcaccaggaagtgcggcagaaggtg
ttcaagaacctgtgcaacatcttccccacggagctggtgcgcatggtgatggggcgctac
cctcatgtcacagacgcccagcagctggcagcggccattttggcagagaagagccagcct
ggagcgtactga
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