Sardina pilchardus (sardine): 134071777
Help
Entry
134071777 CDS
T10667
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spil04147
]
134071777
00535 Proteoglycans [BR:
spil00535
]
134071777
00536 Glycosaminoglycan binding proteins [BR:
spil00536
]
134071777
Exosome [BR:
spil04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134071777
Proteoglycans [BR:
spil00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
134071777
Glycosaminoglycan binding proteins [BR:
spil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134071777
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
134071777
NCBI-ProteinID:
XP_062384603
LinkDB
All DBs
Position
23:complement(20896477..20931169)
Genome browser
AA seq
1654 aa
AA seq
DB search
MADSHLWLGLCLVLALHAGPLHAWFWNPAPATTSSPDPTTPGSKVRAKTEDVKITEVGSE
ILDVASGIKQIMQSWDRPGAAGKTPKQTTGNDQTQMEEQLVVGAGHEGSPEGVEGSRSPE
VSDRALAELDSGFTNPSGVGVHSGPRDVRVPAWMTAGDVSPVCLPRSSDWGFCSSGGGRS
RTFAVPNFLNHTTAEEVGATLADWAVFLSSRCHRDLERFFCLLLTPACPDSGAPLPPSPP
PLLPCHSLCEILTDACWAALGGRELPVACQSLPEGLPHQHPCQPVSSCKCADLTLQEIVA
DPVMSSVKRALDPDDNPAFIFSKKSGVSRLADSLLDSPFHRNFALLFRLMPTRDSGVLLA
LTDKSQMRIELGVKLARGRKGQQVEVYYYDGRPVATFPVTTSKGVWTRFAISFHANKISF
YYNCNTEPTVVTFSRSNEPHLVMPGSALMVGQGGSQDGDKFEGQISQLTISGDPSAAERQ
CYSSDDEDEEDDSGSGSGDGMDTEGGITTQPPKRKTPGTQVLPEPPISSTLSKGTLDVAQ
EETGLKGDSGFDTDGSGGDSFSPGDKGAKGEKGLKGSHGVGLPGMKGDIGPPGLPGPPGP
QGPITEIVDTGDGKKIQKVEGRQGPPGPRGPAGQPGTAGRDGQLGEKGDQGEEGAIGPRG
FPGTPGNTGMKGQKGEVGEGQPGQRGLPGPPGPPGIETTFVDVEGSGGKVAVRPGPPGPP
GPPGPPGPSGSEGDYNGSDGPTGPPGPNGPNGKPGRAGTPGRPGLPGPPGPRGEKGDCGT
VGLGGSSGENPDSYSVTAFFANWLPFLSSSADTEGLAGVSGMPGLPGPTGPSGPSGPPGP
PGPPGQVTIDLNGTEMTLVPGPAGPPGPPGPQGPQGIPGLPGKAGFPGIPGQKGSEGERG
RDGFPGMDGFPGKPGDTGERGFRGEKGDSGRDGGPPGPPGPPGPPGEIIIPNIGDHDGAI
GIPGQPGQPGRAGFPGPMGPKGDRGTPGQPGVPTKGQKGEPGVILAADGTPLYLGLTGQP
GEPGQIGPSGPPGIPGLHGLKGEIGIPGRPGRPGLNGLKGERGDSGGFGGHSFPGLPGPP
GPPGPPGPPGPVLSVDGLLTHGDPSRYHPGQKGEKGDRGNPGIPGFSGGTEGFDSYALLT
QLKGDRGDPGMKGEKGEAGGGGYYDSRYGGSAGPPGPPGPQGPRGESIRGSPGPSGPPGP
PGYGRPGIPGPPGPPGPPGSGLPGAHRTSPTVNVPGPPGPPGPPGIPGLGAGVMILRTYD
SMASASRQQPEGTLVYISDNTDLYIRVRDGCRKVQLGEYTPFPREENQVPGVNPHYPPDH
TGPAAGASSSEGVAPHSGGQYPVLPEPENPPRNGYPLYPGYPNQSGYPYPGVHAGTSSAT
QPHQPTDTQRYPSSQPDGRYPNQRYPDQRYLDGRYPDQRNPDGRYPDQRNPDGRYPDQRN
PDGRYPDGRYPDRRYPNSRYPSSPDRRPSEPQTPTHEHRAGLALHLIALNHPQEGNMRGI
RGADHECFTQAQAIGMKGTFRAFLSSRLQDLYSIVRRSDRERIPIVNLKDEELFSSWESI
FSESEGKMKDNVTIYSFDGRDVLTSDAWPEKMLWHGSSTRGQRITDSYCETWREANHALT
GMSSSLQDGRLLQQTQRSCTNSYVLLCIENSSVA
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atggcagactcacatctctggctaggcctctgtctggtgctggcccttcatgcgggcccc
ctgcacgcctggttttggaatccagcgccggccacgacgtcgtctccggaccccacgacc
ccggggtcaaaggtaagagcgaagacagaggacgtcaagatcacggaggtgggctcggag
atcctggacgtggccagcgggatcaagcagatcatgcagagctgggatcggccgggcgca
gcggggaagacgccgaagcaaacgacgggtaatgaccagacacagatggaggagcagttg
gtggtgggggcaggtcacgaagggtcacctgagggagtggaggggtctcggagtcctgag
gttagtgatagggctttggcagagttggattcagggttcaccaatccttccggtgtaggt
gtgcactcggggccacgtgacgtccgtgtgccggcctggatgaccgccggtgacgtatct
ccggtctgcttgccgcggagctccgactggggcttttgctcgtccggcggcggcaggtct
aggaccttcgccgtgcccaacttcctgaaccacaccacggcggaggaggtgggcgccacc
ctagccgactgggcggtgtttctgagctcgcggtgccaccgggacctggagaggtttttc
tgcctgctcctgacgccggcgtgcccagattcgggcgctccactgccaccatcaccccct
cctctcctgccctgtcacagcctgtgcgagatcctgacggacgcgtgctgggcggccctg
ggtgggcgtgagctgcccgtggcatgccagtccctgcccgagggcctgccccatcagcac
ccctgccagcccgtgtccagttgtaaatgtgcagacctgacactgcaggagatagtggcg
gacccggtcatgtcgtcagtcaagcgtgccctcgacccagacgacaacccggctttcatc
ttcagcaagaagtctggcgtgtcgcggctcgctgatagcctgctggatagcccttttcac
cgcaacttcgccctgctcttccgcctgatgcccaccagagacagcggcgtgctcctggct
ctcaccgacaagtcccagatgcggatcgaactgggcgtcaagctggcccgcgggaggaag
ggtcagcaggtcgaggtctactactacgacggcaggcctgtcgccaccttccccgtgacc
accagcaaaggcgtgtggacgcgcttcgccatctctttccacgccaacaaaatctccttc
tactacaactgcaacaccgagcccacggtggtgacattcagccgctccaacgagcctcat
ctggtgatgccaggatcggccctcatggtgggacaaggaggctcccaggacggagataag
tttgagggccagatatcccagctgaccatcagtggagacccatctgctgctgagaggcag
tgctactcatctgatgatgaagacgaggaagacgactcaggaagtggtagtggagatggt
atggacactgagggtggcatcacaacacagcctcccaaacgaaagaccccaggtactcag
gtgctgcccgagcccccaatctccagcaccctctccaaaggaactcttgatgtcgctcag
gaggaaactggtctgaaaggagactctgggtttgacaccgatggctctggtggtgactcc
ttcagccctggagataagggggcgaagggagagaaagggttaaagggaagtcacggggtc
ggcttgcctggcatgaagggggacattggacctccgggtcttccaggcccccccgggcct
cagggtccaatcacagagatcgttgacactggggacgggaagaagatccagaaggtggag
ggccgtcaggggccgccagggcctcggggcccggcaggacaacctggaacagcaggtcgg
gatgggcagctaggtgaaaaaggtgaccagggtgaagagggcgctattggaccacgtggt
ttcccaggtactcctggcaacactggaatgaaaggccagaagggcgaggttggggagggc
cagcctggccaaagaggacttccaggacccccaggccccccaggaatcgagacgacattt
gtggatgtggaaggctctggaggaaaagtcgctgttcgtccaggacccccaggtcctcct
ggaccgcccgggccacctggaccgtcaggttctgaaggagattacaatggatccgatgga
cctactggacctcctggacctaatggacccaatggaaagcctggacgagccggaactcca
ggaagaccaggacttcccgggccaccagggccaagaggagagaagggagattgtggtact
gtgggacttggtggatcttcaggggaaaatccggacagttattctgtcactgcttttttt
gccaactggctgcctttcctctcctcctcagctgatacagagggtctagcaggtgtgagt
ggaatgcctggactcccaggtcccacaggaccatctggaccttctggccccccagggccc
cctggcccccctggacaggtcaccatcgaccttaatggaactgaaatgaccctcgttcca
ggaccagctggacctcccggtcctccaggaccacagggccctcaaggtattccaggacta
ccggggaaagctggattcccaggaattccaggccaaaaaggcagcgagggtgagcgtgga
cgagatggcttcccagggatggatggcttccctggaaaaccgggggatacaggagaacga
ggtttcaggggtgaaaaaggggactcaggcagggacgggggtccaccagggcctcctggg
cctccaggaccaccaggggagattatcatcccgaatatcggagaccatgacggagctatt
ggaattcctggacaaccgggtcagcctggtcgggcaggtttccctggtccaatgggacca
aaaggagacagagggaccccagggcagccaggtgtccctactaagggccagaaaggagaa
cctggagtgattctggcagcggatggaactcctctgtatctgggtttgaccgggcagccg
ggagagcctggacaaatagggccatctggacctccgggtatacccggccttcacggactg
aagggggagatcgggattccaggcagaccgggccgcccaggtctgaacgggctgaaagga
gagaggggagactccggtggttttggtggacatagctttccgggtctcccagggcctcca
ggacctccagggcccccgggccccccagggcctgttctgtctgtggacggattgcttacg
catggagatccatcccggtatcatccaggccaaaaaggagagaagggagaccgaggaaac
cccggcattccagggttctcaggtggcacagaaggctttgactcctatgctcttttgacc
cagctgaaaggtgacaggggagatccgggtatgaaaggagagaagggagaggcgggtggc
ggagggtactatgactcacggtacggcggaagcgctgggcctcccggtcccccaggacca
cagggtccaagaggagaatccatacggggttccccaggcccctcggggcccccaggccct
ccaggatatggtcgcccaggaatcccaggacctccagggccacctggtcccccggggagc
ggcctacctggagcccatcgaacctctccaactgttaatgttccgggtccccctggccca
cctgggcctcctggcatccctgggttaggagcaggggttatgattctgaggacatatgac
agcatggcctctgcctcaagacaacagcctgaggggaccttggtctacatctcagacaac
acagacctgtacatacgagtgcgagacggttgccgaaaagtgcagcttggtgaatatacc
cccttcccaagagaggagaaccaggtgccaggtgtcaacccgcactatcctccggatcac
actggaccggcggcaggggcctcgtcctccgagggagtggctccacactctgggggtcag
taccctgttctccccgagcccgagaaccctccccggaatgggtaccctctctatccgggg
taccccaatcaatcaggatatccttaccctggggtgcacgcgggcacatcatccgcaacc
caaccgcatcaacccacagatacccagaggtacccctcctcacagcctgacggacgctat
cccaatcaacgctatccggaccaacgctatctggatggacgctatccggaccaacgcaat
ccggatggacgctatccagaccaacgcaatccggatggacgctatccagaccaacgcaat
ccagatggacgctatccagacggacgctatccggatcgacgctatcccaatagccggtat
ccaagcagcccagaccgaaggcccagtgagccccagacaccgacccatgagcacagggct
ggacttgcgctgcacctgatcgccctgaaccacccccaggagggcaacatgaggggcatc
cgcggggcagaccacgagtgcttcacgcaggcacaggccataggcatgaagggaacattc
cgggcgttcctgtcgtcgcggctgcaggatctgtacagtattgtgcgcaggtccgacagg
gagcgaattcccatcgtcaacctgaaggatgaagagctcttcagcagctgggagtccatc
ttcagcgaatcagagggcaagatgaaggacaacgtgaccatctactcatttgatggaagg
gatgttctcaccagtgatgcttggccggagaagatgctgtggcacggctcgagcacgcgg
ggccagcgcatcaccgacagctactgcgagacgtggcgtgaggccaatcacgccctcacg
gggatgtcctcctcgctccaagatggccgccttctgcagcagacacagcgcagctgcacc
aactcctacgtgctgctgtgcatcgagaacagctccgttgcctaa
DBGET
integrated database retrieval system
