Sardina pilchardus (sardine): 134072208
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Entry
134072208 CDS
T10667
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134072208 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134072208 (patl1)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134072208 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
134072208 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
134072208
NCBI-ProteinID:
XP_062384752
LinkDB
All DBs
Position
2:35510349..35522418
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AA seq
773 aa
AA seq
DB search
MFRFQSLDEDCTLEEEEEGQVEEEDDIDQFNDDTFGAGAVDDDWQEEHARLAELDEQVRD
VFAGGDASNASLPPPPGSVPYPSSLPRPSASTLPPPGLEERGGGDLAESLTRLLLGSDPA
IAGVGAAEPDRSRFPPMSHAQVPLSGLPAPHPSLLSYQQHQHLLHRGGTPLPQVNSHSIW
ENSMGFGPVSVSPGLVTHMEDSPLMSIIKEVGLPKRPPPIRGEDGLDLSERVPPPRSSSP
VIGSPPVRAVPIGTPPKQPMSHALNQQIHCPTAVHVRAPIQHRFPPPFPERLSPNTLLNI
AMASTSFQNSPLCRPPFPAGVGPVLSQIQRAQMLNAQVGPFPRGGPAPPMLPGGFRPFFS
QPPPRVGPHIPPPNHNPIRHNTTHLHPQHRRMLTQRMQSRGDRGGRVGDRRSRDPYSNLM
TQKEKEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRLERDKDCIRKEPTTKLITPQVA
KLEQTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVE
KMYSLLLEVQDFEKKFLQTPEEQREALLEQHKTHTLQLYNSLKEKEWEDRVSDEQCLMIM
SVRKGKRLMSRLLPFLPPPQAAAVVMGIARNLPALAKKDKHDQQVLCWLVEPVAVVIQSM
SSSALTDLLQELQGSEGQLPRVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTEL
VFSVTRELLKVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtctctggatgaagattgcaccctggaggaggaagaggaagggcag
gtagaggaggaggatgacatcgaccagttcaatgatgacacatttggagccggtgctgtt
gatgatgactggcaggaggaacatgctcgcctggcggagctagatgagcaggtgcgagat
gtgtttgccgggggcgatgcatccaacgcctcactaccacctcctccgggcagtgtccca
tacccctcgtctttgccccggccctccgcctccacactgcctcctccaggcttggaagag
cggggtggtggggatctggctgaatctctgacccgtctactccttgggtcagatcctgcc
attgctggagtgggcgctgcagaaccggatcgctcccgcttcccgcccatgtctcatgcc
caggtacccctctctgggctcccagctccacacccctcattgctaagctaccaacagcac
caacacctcctgcatagggggggaacccccttgccacaggtgaactctcacagtatatgg
gagaacagcatgggatttggacctgtgagtgtttctcccggactggtcacgcacatggag
gacagtccactgatgtccattattaaggaggtggggctgcccaagagacctccgcccatc
agaggtgaggatggcctagacttgtcagaaagggtgccgccaccccgctcatcctcacca
gtcatcggaagcccgcctgtgagggctgtgcctattggaacccctcccaaacagccaatg
agtcacgccctcaaccagcagatccattgccctactgcggttcacgtacgagccccaatc
cagcaccgtttcccccctcccttccctgagcgcctctctcctaacaccctcctcaacatc
gctatggcctccacgtcttttcagaactctcccctgtgtcggcctccgtttcctgctggg
gtgggaccggttctctctcagatccagcgggcccaaatgctcaacgcccaggtgggcccg
tttcctcgaggtggacccgctcctcccatgttgccaggtggttttagaccgtttttcagc
cagccgcctccccgagtgggacctcatatccctcctcctaaccacaaccccattcggcac
aacactacacacctccacccgcagcaccggcggatgcttacgcagaggatgcagagcagg
ggtgaccgtggtggtcgagtaggggatcggcgtagcagggacccctacagtaacctgatg
acccagaaggagaaggagtgggtggcgcgcattcagatgatgcagctccagagcactgat
ccttacctggatgactactactatcagaactattatgagaagatggagaagcgtctggag
agggacaaagactgtatcaggaaggagcccaccaccaaactaatcacccctcaggtggcc
aaactggagcagacataccgcccagttcagtttgctggctccctaggaaagctcaccgtc
tctagtgtgaacaatcccaggaagatgattgatgcagtggtgaccactcgcactgatgat
gaggagaagagagaaaagcaggtgtggaacaagaggcggcagattctctacactgtggaa
aagatgtacagcctgctcctggaagtccaggactttgaaaagaaattcctgcagactccg
gaggagcagagagaggccctgctggagcagcacaagacccacacgctgcagctctacaac
tcgctcaaagagaaggagtgggaagacagagttagtgatgaacagtgcctcatgatcatg
tccgtgaggaagggcaaacgcctcatgtctaggctcctccccttcctgcctcctcctcaa
gctgctgctgttgtcatgggcatcgcccgaaatctgccagccctggcaaagaaagacaaa
catgaccagcaggtcctgtgctggttagttgagccagtcgccgtcgtaatccagtccatg
tccagttccgccctcacagacctcctgcaggagttgcaaggcagcgagggtcagcttccc
agagtactgcaaaataagtttggcgtgacacttctctacctaattctgagtgagggagag
agaatgcagagctcagatcccaactgtcagctaatggatgataatcgatggacagagttg
gtgttttcggtgactagagagctgttgaaagtcccctcgtcatcgctctctcctcctctc
tttacacctcccaaccttctctctctattctctcgctacgtagaccgccagaggctggag
ctgttacaggagaaattacagatcactgcattatccaggtag
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