Sardina pilchardus (sardine): 134072230
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Entry
134072230 CDS
T10667
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03250
Viral life cycle - HIV-1
spil03272
Virion - Hepatitis viruses
spil04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
134072230 (pdcd6ip)
03272 Virion - Hepatitis viruses
134072230 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
134072230 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spil04131
]
134072230 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spil04147
]
134072230 (pdcd6ip)
Membrane trafficking [BR:
spil04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
134072230 (pdcd6ip)
Exosome [BR:
spil04147
]
Exosomal proteins
Proteins found in most exosomes
134072230 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
DUF2226
Snapin_Pallidin
Zw10_N
COG3_N
Sec8_N
DUF1978
Motif
Other DBs
NCBI-GeneID:
134072230
NCBI-ProteinID:
XP_062384800
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All DBs
Position
24:complement(26593657..26612420)
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AA seq
873 aa
AA seq
DB search
MATFISVPFKKSTEVDLVKPLSKFVTATYPVGEEQAEYIRAVEELNKLRKSALGRPLDKH
ESSLDILLRYYDQLCVVEPKFPFPELCLTFTWKDAFDKGSLFGGSVKLALACLGYEKTCV
LFNIGALASQIASEQNLDSDEGLKAAAKNYQLASGAFAHIKDTVLSMLSREPTMDISPET
ASTLGQIMLAQAQEVFCIKATSDKMKDAIIAKLANQAADFYGDAFKQCQYKENLPKYFYF
QEVLPVLAAKHCMMQATAELHQAALANQKKRFGEEIARLQHATELVKTVASRYDEYVNVK
DLSERVNRALTAAKKDNDFIYHDRVPELKDLEHIGKATLVKATAIQNPLSPKFTDLFEKM
VPMAVQQSVSVSNQRKAETVNRLVGSLREATNLCNGVLASLNLPAALEDLSGDSVPQSIL
EKSRAVMAQGGLQSVEMLIKELPELLTRNREILDESLKMLNDEEATDSELRAKFNQRWNR
TPSGDLYKPLRTEGANFSSVLDKAVSADQVVRERFNTHCEMIALLCRPENELNSAIPSAN
PTKTLQGSEVVSVLRAQLTQLDEVKQEREALEGEVKAVTFDLSSSFLTALAQDGAINEEA
LSTGALQTHYGSHTERVQKSLRSQEELLAKIQTSHQEFSALKQSTNEANAREEVLKKLAT
AHDNYTEISSNLKEGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKELQQSIAREPS
APSFNVPAYQSAPSTNPASAPNPTPAPRTVFPQTTPAKAAPPARPPPPSVTPQAASGPPG
SAPAAAAGGNPPPVAPAASQAQGPPYPSYQGYPGYYQMPMGYNPYMYQGQYGVPYMPYQT
PPAQGGYPAAPPNQQPYPYPQQAGQQQPYYPQQ
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtttatatcagtcccgtttaaaaagtcaacggaagtcgatttagtgaaacca
ttatcgaaatttgtcacagccacgtatccagttggtgaggaacaggctgaatatatacgt
gcggttgaggaactcaataagctgcgcaaaagcgctcttgggaggcccctggacaaacac
gagagctccttggacatattgttgcggtactatgatcaactctgtgtcgttgagcccaaa
tttccattcccagagctctgtctcacgttcacctggaaggatgcgtttgataaaggatca
ctctttgggggttctgttaaacttgccctggcgtgtttgggctatgagaagacctgcgtg
ttgttcaacattggagctctggccagtcagattgcctcagaacagaacctggacagtgat
gaagggctaaaggctgctgccaagaactatcagctcgccagtggtgcgtttgcacacata
aaagacactgtgttatctatgctgtcccgggagcccaccatggacatctcccccgagact
gccagcaccctcggtcagatcatgctggctcaggctcaggaagtcttctgcatcaaagcc
acctccgacaagatgaaggatgccattatagctaaactggctaaccaggctgcagatttc
tacggcgatgcatttaagcagtgccagtataaagaaaatcttcctaagtatttttatttc
caggaggtgctcccggtcctggctgccaaacactgcatgatgcaggccaccgccgaactg
caccaggccgccctggccaatcagaagaagcgcttcggagaggagattgctcgtctgcaa
catgctactgagctggtgaaaacggttgcatcacgctatgacgagtatgtcaatgtcaag
gatctgtcagaacgcgttaacagagctcttaccgctgcaaagaaagacaacgacttcatc
taccacgaccgggtgcctgagctcaaggacctcgagcacatcggcaaggcaaccctcgtc
aaggccaccgccatccagaaccctctcagcccgaagtttaccgatctttttgagaagatg
gttcccatggcagtgcagcaatccgtgagcgtgtccaaccagaggaaggccgagacggtc
aacagactggtcggcagcctgagagaagccactaacctctgcaacggcgtcctggcatct
ctgaacctgccggcggctctggaggacctgtccggggactcggtgccccagtccatcctg
gagaagtcccgcgcggtgatggctcagggcggactgcagagcgtggagatgctaatcaag
gagctgccggagcttctcacgcgcaaccgagagatactcgatgagtctctgaagatgctg
aacgatgaggaggccacagatagtgagttgagggccaaattcaaccaacgctggaacaga
acgccctctggtgatctgtacaaacccctcagaacagagggagccaacttcagcagtgtg
ctggacaaggcggtgtccgctgaccaggtggtgcgcgagcgcttcaacacccactgtgag
atgatcgcgctcctgtgccgccccgagaacgagctcaactctgccattccctctgctaac
cccaccaagacactacagggcagcgaggtggtcagtgtgttgcgagcacagctgactcag
ctggacgaggtcaagcaggagcgcgaagccctggagggagaggtcaaggccgtgaccttt
gacctttcatcctccttcctgaccgccctggctcaggacggggccatcaacgaggaggcc
ctcagcaccggcgcgttacagacacactatggcagccacacggagcgcgtccagaagagc
ctgcggtctcaggaggagctcctcgccaagatacagacctcccaccaggagttttccgca
cttaagcagtccaccaacgaggctaacgccagagaggaggtcctgaagaagctcgccacg
gctcacgacaactacaccgagatctccagcaacctgaaggagggcaccaagttttataac
gacctgacagagatcttgctgaagttccagaacaagtgcagtgacattgtgttcgcccgc
aagaccgagcgggatgagcttctcaaagagctgcaacagagtattgcccgcgagcccagc
gccccatccttcaacgttccagcctatcagagcgctcccagcacaaaccccgcctctgcc
ccgaacccgactccagctccgcggaccgtttttccccagacgaccccggccaaagcggct
ccgcctgccagacctcctcccccgagcgtcaccccacaggcggccagcggccccccgggc
tccgctcctgccgctgcagccggaggcaacccgccaccagtggctcctgcagcttctcaa
gcccaaggacccccatacccatcctatcagggatacccagggtactaccagatgccaatg
ggctacaacccgtacatgtatcagggtcagtacggagtgccctacatgccgtatcagacg
ccacctgcccagggaggctacccagcagcccctcccaaccagcaaccttacccctaccct
cagcaggctgggcaacagcagccttattacccacagcaataa
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