Sardina pilchardus (sardine): 134072467
Help
Entry
134072467 CDS
T10667
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03013
Nucleocytoplasmic transport
spil03015
mRNA surveillance pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134072467 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
134072467 (ddx39b)
03015 mRNA surveillance pathway
134072467 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134072467 (ddx39b)
03041 Spliceosome [BR:
spil03041
]
134072467 (ddx39b)
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134072467 (ddx39b)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134072467 (ddx39b)
Spliceosome [BR:
spil03041
]
Complex C
Other components
EJC/TREX
134072467 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134072467 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
PRD1_P5_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
134072467
NCBI-ProteinID:
XP_062385150
LinkDB
All DBs
Position
24:25699545..25707697
Genome browser
AA seq
437 aa
AA seq
DB search
MAENDVENELLDYEEDEVDTAGGVGDGGLGGGAGDAMSMQKAAVKGSYVSIHSSGFRDFL
LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT
GQVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKRESPHVVVG
TPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL
SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVV
IFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM
DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDARILNDVQDRFEVNI
SELPEEIDISTYIEQSR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaacgatgtggagaacgagctcttggactacgaggaggatgaagtggatacc
gcagggggcgttggagatggtgggttgggaggaggggcgggagacgccatgtccatgcag
aaggcggcggtaaagggttcatatgtgtccatccactcctccggcttcagggactttctg
ctgaagccagaactgctgagggccatagtggactgcggctttgagcacccatctgaagtt
cagcatgagtgtattccccaggccattttgggaatggatgtgttgtgccaggccaagtcc
ggtatggggaagacagccgtattcgtactggccacactgcagcagctggagccggttact
ggtcaggtgtcagtgctggtgatgtgtcacacacgagagctggccttccagatcagcaaa
gagtacgagcgcttctccaagtacatgcccactgtcaaggtggccgtgttcttcgggggt
ctgtccatcaagaaggacgaggaggttctgaagcgagagagtccccacgtggtggtgggc
acgccagggcgcatcctcgccctctcccgcaacaagagcctcaacctgcgccacatcaag
cacttcatcttggatgagtgtgacaagatgctagaacagcttgacatgcgtcgtgatgtg
caggagatcttccgcatgactccccacgagaagcaagtgatgatgttcagcgccaccctc
agcaaagagatccgccctgtctgcaggaagttcatgcaagatcccatggaggtctttgtg
gacgacgagacgaagctgacgctgcacggcctgcagcagtactacgtcaagctcaaggac
aacgagaagaacaggaagctctttgacctgcttgacgtgctcgagttcaaccaggtggtg
atcttcgtgaagtcggtgcagcgttgcattgctctagctcagctgctggtggagcagaat
ttcccagctattgccatccaccgggggatgccacaggaggagaggctgtcccgctaccag
cagtttaaagacttccagcggaggatcctggtggccactaatctctttggccgcgggatg
gacatcgagagggtcaacatcgccttcaactatgacatgccagaggactcggacacatac
ttgcatagggtggcacgcgcgggccgattcgggacgaagggtctggccatcacatttgtg
tctgacgagaacgatgcccgcatcctgaacgacgtgcaggaccgctttgaagtcaacatc
agtgaactgcccgaagagatcgacatctccacctacattgagcagagccgatga
DBGET
integrated database retrieval system
