Sardina pilchardus (sardine): 134072636
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Entry
134072636 CDS
T10667
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spil04131
]
134072636 (vps50)
Membrane trafficking [BR:
spil04131
]
Protein recycling
Others
EARP complex
134072636 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
134072636
NCBI-ProteinID:
XP_062385406
LinkDB
All DBs
Position
24:complement(23791672..23927365)
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AA seq
991 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESMADMSPVENFRIPSKEELREMREQPIDPQAEQEIIDSIEEV
YFSSDSFDMVQHELEKLPPDLNLQEIEEYRDKLKRQQSAVSKKVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLSFSKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITTDSYIPCLTDLCKALWEVMLSYHRTMQWHEEHDKEEAASPDPE
GSSEDGSDEAVVGRTYVKKKLEHGLSRIWQDVQLKVKAYLLGTDMSNFKYDDFIVVLDVI
SRLMQVGEEFCGSRSEVLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFS
IAQLHEFKFMGQCRSPSVSPSRRASSTTSPTEVSLFEQYLPGGNPFERQIDNKEEETEDV
LASNGYESDELEKNVYQDYDSDSDVPEELKQDYVDEQTGDVPVKSVSRETLRSRKRSDYN
LNKTNAPILTNTTLNVIRLVGKYMQMMSILQPIAFDVIHCVSQLFDYYLYAVYTFFGRND
MPVTSQSAPAPGKEQGAARQAPPVYWYESSGLGLISSRLRTTLNRIQESLIDMEPSGESL
GPHGPPEERREKVPSPHLSQMVVLTSSGTLYGLAQRVVATESLVFLAEQFDFLQSHLDAM
MPSAKKPFLQQFYSQTVSTASELRKPIYWIVAARAIDYEQMLLLMAGVKWDIKEIMSQHN
VYVDVLLKEFEQFNKRLSEVSRQVRIPLSVSNVLWEHCIRLANRTLVEGYANVKKCSNEG
RALMQLDFQQFLTKLERLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLA
NLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaattaagtctttaatggcccgacagggtctaaaaagtccccaggaaagcatg
gcagatatgagccccgtggagaatttcaggatcccaagtaaggaggagctgcgcgagatg
cgggagcagcccatcgacccgcaggccgagcaggagatcatcgacagcatcgaggaggtg
tacttctccagcgactccttcgacatggtgcagcacgagctggagaaactcccacctgac
ctcaacctccaggagattgaggaataccgagacaagctgaagcggcaacagtcggcggtc
tccaaaaaagtagctgatctcatcttggagaagcagccctcctatgttaaggagctggag
agggtgacgtcactgcagaccaacctgcagctggccgcagtcatctgcaccaacgccagg
aggcagctgagcttttctaaagagggcttcactgaggccagtctcgggcttctagccaac
cagaggaggaggcaactgctgaccggcctactcaagtcactgaggaccataaagaccctg
caaaggacggacgtgaggcttagtgagatgcttgaggaggaagattatccaggtgctatc
cagttgtgtctggaatgtcaaaaggcggccagcacgttcaaacactacagctgcatcagt
gagttgaattcaaagcttcaggatacactggagcagatagaggagcagctggatgtggcc
ctgtccaagacctgcaagcactttgacgtctcgcactacaccaaagtccagctggcctac
actctcctgggcaaaacgcagacggccatggaccagctccacatgcacttcacccaggcc
atccacaacaccgtgttccaggtggtgcttggctacgtggagctgtgcgctggcaacgcc
gacaccaagttccagaagatgcagtacaaagacctctgcacgcacatcaccacagacagc
tacatcccctgcctgactgacctctgcaaggcattgtgggaagtgatgctgagctaccac
aggacaatgcagtggcacgaagagcacgacaaggaggaggcggccagccctgacccagag
ggcagcagcgaggacggctcggacgaggcggtggtgggccgcacctacgtgaagaagaag
ctggagcacggcctcagccgcatctggcaggacgtccagctgaaggtgaaggcttatttg
ctggggacggacatgtccaacttcaagtacgacgacttcatcgtggtcctggatgtcatc
agcaggttgatgcaggtgggggaggagttctgcggtagccgctccgaggtcctccaggag
tccatcaagcgccagagcgttaactacttcaagaactaccacaggactcgcctggaggag
ctgcggatgttcctggagaatgagacatgggagctgtgccctgtgaaatccaacttcagc
atcgcccagctccacgagtttaagttcatgggtcagtgtcggtccccgtcagtgtcgccc
agtcgccgggcttcgtccactacaagccccacagaggtgtctctgttcgagcagtacctg
ccgggaggcaaccccttcgagaggcagatcgacaacaaagaggaggagaccgaagacgtg
ctggcctccaatgggtatgagtcagacgaactggagaagaacgtgtaccaggattacgac
agtgacagcgacgttcccgaggagctcaagcaggactacgtggacgagcaaacgggcgac
gtgcccgtcaaaagtgtttccagggagaccttgcgcagccggaagcgttcagactacaac
ctcaacaaaacaaacgcacccatcctgaccaacaccaccctcaacgtcatacggctggtc
ggaaagtacatgcagatgatgagcatcctgcagcccatagcctttgacgttatccactgc
gtctcacagctctttgactactacctgtacgccgtctacacattctttggacggaatgac
atgcctgtcactagccagtctgcgcccgcgccaggcaaagagcagggcgctgccaggcag
gcccccccggtttactggtatgaatcatcgggcctgggactgatcagcagccgcctgagg
accacgctgaaccgcatccaggagagcctcatcgacatggagcccagcggggagagcctg
ggtccccacggtccccctgaagaacgccgggagaaggttccgagcccgcacctgagccag
atggtggtgctgacctccagtggaacgctctacggcctcgcccagagagtggtggccacc
gagtccctagtgtttctggccgaacagtttgacttcctgcagtcgcaccttgatgccatg
atgccttcagccaagaagcccttcttgcagcagttctactcgcagacggtgtccacggcc
agcgagctgcggaagcccatctactggatcgtggcggccagagccatcgactacgagcag
atgctgctcctcatggctggggtcaagtgggacatcaaggagatcatgtcccagcacaat
gtctatgtggatgtccttttgaaggagttcgagcagttcaacaagcggctgagcgaggtg
tctcggcaggtgcggatccccctgtccgtctccaacgtcctgtgggagcactgcatccgt
ctggccaaccggacactggtggagggctatgcaaatgtgaagaagtgcagcaacgaggga
cgtgccctcatgcagctggacttccagcagttcctcaccaagctggagcgcctgaccgac
ctgcggcccatccccgacaaggagttcgtggagacctacatcaaggcctactacctgacc
gagaacgacatggagcagttcatcaagaaccaccgggagtactccatgaagcagctggcc
aacctggtgaatgtgtgtctgggctctcacatcaacaagaaggcccggcagaagctcctg
gctgccatcgatgacattgacaggcccaagagatag
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