Sardina pilchardus (sardine): 134072657
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Entry
134072657 CDS
T10667
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134072657 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134072657 (cnot3b)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134072657 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134072657 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
CobA_CobO_BtuR
DUF4407
Motif
Other DBs
NCBI-GeneID:
134072657
NCBI-ProteinID:
XP_062385432
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All DBs
Position
24:9225428..9241285
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AA seq
920 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKVLLLHNAANANQKEKYEADLKKEIKKLQR
LRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLALKVDPA
QKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQERIDELKRMIERHR
YHILMLETILRMLDNDSIQVDSIRKIKDDVDYYLDSCQDPDFEENEFLYDDLDLEEIPTP
LVATSPPGNSSMDDELFQQHSSSTPTTSTSSSPTPPSPATCVMENSEDDKKRGRSTDSEV
SQSPVKNGNPSLSSSSSSSSSSSSSSCSSSSSSASLGTSSSSSSMVSMATITAGGGSVSG
SGVPAGVLPASGSYSSATQGHVQLQQAAKTAAAIAAVSTTTSPAVAVAAAVVVASHASSP
ASSGTGGGLLPRPPSSSSSPPSSSHSQTPPAVLPGLGGLSGGLSGGFGAALGAGPVPGSG
VLGGHSGMPASLSSMSALLAGSGSTPAPYAQAAASSANAIVNSLIANANASASANANATA
NGSPLGSMVGTAVTTVSTGLLGMAPTSLSLAPGSTIGAQGPPLVAPTLLAGGAAPGGISG
SLPAIARPPSVQKQNGSTSYSAVLAESTSDAALNSVSQSQNSQLTSLGSSTTQLKDAGSI
LFPPSSPSPSYSEAKPAGGSLLNGPHSYTQAMDGIKEPPSSLKSMAERAAFGSGLEGEMA
SLHITGDMFPSSTAPPGAPTAPQLSHSEVNIPPSLGVCPLGPVPLSKEQGYQQAMQESAW
GHMPHPSDSERIRCLKEGLPLGQYLMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFF
IFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWG
QRKKEGFTFEYRYLEDRDLQ
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagagaaaacttcaaggtgaaatagatcgatgtctgaaaaaagtggcggaa
ggagtggagcagttcgaagacatctggcagaaggttcttttgcttcacaatgcagcaaac
gcaaatcagaaagagaaatatgaagctgacctcaagaaggagatcaagaagttacagagg
ctccgtgaccagattaagacctgggtggcctccaacgagatcaaagacaaacggcagcta
gtggagaaccgcaagctcattgaaacgcaaatggagcgcttcaagatagtggagcgggag
accaagacgaaggcgtactccaaagagggcctgggcctggcgctgaaggtggaccctgcc
cagaaggagaaggaggaagtgggccagtggcttacgaatacaatagacactttgaatatg
caagtggaccagtttgagagtgaggtggagtcgctctctgtccagacacgcaagaagaaa
ggagacaaagagaaacaggagcggatagacgaactcaagcggatgattgagaggcaccgc
taccacatcctcatgctggagaccatcctgcgcatgctggacaacgactccatacaggtg
gactccatccgcaagatcaaggatgacgtcgactactacctggactcctgtcaggacccc
gactttgaggagaacgagttcctctacgacgacttggacctggaggaaatcccgacgcct
ctggtggccacctctcccccgggcaactccagcatggatgacgagctgttccagcagcac
tccagcagcacgcccaccacctccacctcctcctcgcccacgccgccctcacccgccacc
tgcgtcatggagaactctgaggatgacaagaagcgcggccgctccacggacagcgaggtc
agccagtcgccagtgaagaatgggaacccttcattgtcttcctcttcctcctcctcctcc
tcctcttcctcctcctcctgctcatcttcgtcgtcgtctgcatccctggggacctcctcg
tcctcctcctcgatggtctctatggcgaccatcaccgccggcggcgggtcggtttccggg
agcggagtcccggcgggggtcctcccggcctccggcagctacagctccgccacgcagggg
cacgtgcagttacagcaggcagccaagaccgccgccgccatcgccgctgtctccacgacc
acctcccctgctgtcgccgtcgccgccgccgtcgtcgtcgctagccacgcctccagcccc
gccagcagcggcaccggcggcggcttgttgccccgacccccttcgtccagctcctcacct
cccagcagcagccactctcagacaccgcccgccgtgctgcccggcctgggcggcttgtcg
ggcggcttgtcgggcgggttcggcgcggccctgggcgcgggccccgttccagggagcggc
gttctcggcggccactccgggatgccggcgtccctgagcagcatgtcggcgctgctggcc
ggctcgggctccacgccggccccttacgcccaggcggccgcctccagcgccaacgccatc
gtcaacagcctgatcgctaatgctaatgctagtgctagtgctaatgctaacgctaccgct
aacggcagccccttggggagtatggtcgggacggcggtgaccaccgtttccacaggcctc
ctgggcatggcccctacctccctcagcctggccccgggctccacgattggagctcagggg
ccccccctagtggcccccaccctgctggcgggaggagcggccccaggagggatctcagga
agcttgccggcgatcgccaggcccccaagtgtccaaaagcagaacggcagcacaagttac
agtgctgtgctcgctgaaagcacatcagatgccgccctaaacagtgtcagccaatcacaa
aacagccagttaacgtctttgggctcctcaaccactcagcttaaggatgcagggtccatc
ctgttcccacccagcagcccctccccttcatacagcgaggccaaaccagcaggaggcagc
cttctaaacggcccccactcttacacacaggccatggatggcattaaggaacctccgagt
tctctgaagtccatggcagaaagggcagcttttgggtcaggcctggaaggagagatggct
agcttgcacatcactggggacatgttccccagctccacagcgccccctggtgctcccacg
gcaccgcagctgtcgcactccgaggtgaacatccctccgtcgctgggcgtgtgcccgctg
ggtcccgtgcccctgtccaaggagcagggctaccagcaggccatgcaggagtcggcctgg
gggcacatgccccacccgtctgactccgagaggatcaggtgcctaaaagaggggctgccc
ttggggcagtacctcatgaggaacccctgccccacactgccgttccaccaccaggtgccc
ccgccacactcggacaccgtggagttctaccagcggctctccacagagaccctcttcttc
atcttctactacttagagggcacaaaagcgcagtatctggcggctaaggccctaaagaag
cagtcctggaggttccacaccaagtacatgatgtggttccagcgacatgaggaacccaag
accatcacggatgaatttgagcagggcacatatatttattttgactatgaaaaatggggc
cagaggaagaaggaagggttcaccttcgaatacagatacctggaagaccgagacctgcag
tga
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