KEGG   Sardina pilchardus (sardine): 134072742
Entry
134072742         CDS       T10667                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03082  ATP-dependent chromatin remodeling
spil03083  Polycomb repressive complex
spil04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    134072742 (rbbp4)
   03083 Polycomb repressive complex
    134072742 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    134072742 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:spil03036]
    134072742 (rbbp4)
Chromosome and associated proteins [BR:spil03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     134072742 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     134072742 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     134072742 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     134072742 (rbbp4)
    PRC2.2
     134072742 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     134072742 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    134072742 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    134072742 (rbbp4)
   NuRF complex
    134072742 (rbbp4)
   NuRF complex (fruit fly)
    134072742 (rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_WDR19_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 134072742
NCBI-ProteinID: XP_062385558
LinkDB
Position
24:28371558..28381809
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECCPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADA
EVQG
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggcggataaagaagctgcatttgatgatgcggtggaggagagggtcatcaacgaggaa
tataaaatttggaagaaaaacactccgtttctctacgacctggtgatgacccacgcgctc
gagtggcccagcctgaccgcacagtggcttcctgacgttacgcgacctgaggggaaggac
tacagcgtgcaccgccttgttcttgggacacacacctcagacgagcagaaccacctggtc
atagcaagcgtccaactgcccaacgacgacgcccagtttgatgcgtcgcactacgacagc
gagaaaggagagtttggtggttttggctcggtgagtggaaagatagagattgagattaag
attaaccacgagggggaggtcaacagggctcgctacatgccccagaacccctgcatcatc
gccaccaagacccccaccagcgacgtgctcgtcttcgactacaccaaacacccctccaaa
cctgacccctctggagagtgctgccctgacctgcgcctgcggggtcatcagaaagagggg
tacggcctctcctggaaccccaacctcagcggctgcctgctcagcgcctcagacgaccac
actatctgtctgtgggacatcagcacggtgcctaaggaggggaaggtggtggatgccaag
accatcttcacgggacacacggccgtggtggaggacgtctcctggcacctgctgcacgag
tcgctcttcggctccgtcgcagacgaccagaaactcatgatctgggacacccggtccaat
aacacgtccaagcccagccacgcggtggacgcacacactgccgaggtcaactgcctgtcc
ttcaacccctacagcgagttcatcctggccaccggctcagctgacaagacggtggctctt
tgggatctgcgaaacctgaagctgaagctgcactcgtttgagtcgcacaaggacgagatc
ttccaggtccagtggtctccccataacgagaccatcctggcatccagcgggaccgacaga
agactcaacgtctgggacctcagtaaaattggagaggagcagtcgcctgaagatgctgag
gatggtccccccgagctgctgttcatccacggcggccacacagccaagatctcagacttc
tcctggaaccccaacgagccctgggtcatctgctccgtctccgaggacaacatcatgcaa
gtctggcagatggcggagaacatctacaacgatgaggatccagagggtgcggccgacgcc
gaggtccagggttga

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