Sardina pilchardus (sardine): 134072760
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Entry
134072760 CDS
T10667
Symbol
col14a1b
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
spil00535
]
134072760 (col14a1b)
Proteoglycans [BR:
spil00535
]
Extracellular matrix (ECM) proteoglycans
Others
134072760 (col14a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
NDNF
FN3_Tor_3rd
VWA_3
DUF4959
Motif
Other DBs
NCBI-GeneID:
134072760
NCBI-ProteinID:
XP_062385579
LinkDB
All DBs
Position
24:complement(16854966..16919058)
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AA seq
1868 aa
AA seq
DB search
MQVAGFSSLLILTSVWLVPLPVQGQVPSPRRLRFKVLGTDKLSVSWKEPKGDIEGYKLFY
NTESGKEVKELRTPKNEAKAVIENFDPDQEYNIKVVAVRGNQESKPLVGQYKAQGTSTDA
SNDIVQPQKQKDPSANEEDNEIREVDQFTCRIPATADIVILVDGSWSIGRINFRLVRAFL
ENLVSAFSLGSDQTRIGLAQYSGDPRIEWHLNAHTTKQSVIDAVKTLPYKGGNTLTGLAL
TYILENSFKPESGARTGIPKIGILITDGKSQDDVQPPAQSLRNAGIELFAIGVKNADENE
LKAIASAPQETHVYNVADFSDMSSIVESLTRTICDRVEQLNKDLKGESPQPESPAPPRDL
VTSEVTARSFRVTWTHAPGAVEKYRVVYYPAKGDKPEEVVVNGNENTVVLRYLNSLTEYQ
VAVFAVYSNTASEALRGTATTLALPMVDNLELFDVTHNSMQVRWKGAAGASGYMILYAPL
TEGDPADEKEVKVADTVTEVELEGLTPDTEYTVTVYAMYGDDASDPMTSQETTLPLSPAR
NLRITDVSHSTAQLSWNEASRKVRGYRIVYVKTRGAETKEFEVGPITTQLLQNLTSLTEY
TVAIYAKYAEGPSEALRGSFTTKTVPEPLNGQTKEVGETSFRVSWRHPATDIVLYKLLWG
ESDGEGDLEEVMVNAQTNTYLVTGLKPDTEYEVSLSAIYRDESESESVILVETTVAGTAT
VRTTTTTTAVARQAIRNMQISDQTTFSFQVSWEQQDPNVRQYRVAYVTAQGDRAEEVKMI
PSQQKSILLQSLLSDTEYRVTVTPVYAEGPGPVMARTGRTLPLTSPRNLKVSEEWYNRFR
ITWDTPPSPTMGYRIVYQPISAPGRALETFVGEDVNTILILNLLTGTEYSVKVIASYTTG
SSEALVGKAKTLYLGVTNLKTYQVRTTSMCAQWQPHRHATLYRVMIESILNGEKQEASLG
GGATRHCFNNLKPNTDYKISIYAQLQETEGPAVTTIQKTFPLPTAAPTRPPTTPPPPTVP
PAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIRFLHSTTGALDQIGPDGTQVAIAQFSDD
ARTEFKLNSYNNKERLLEAIQRIAYKGGNTKTGKAIKHVKDTIFTAEGGIRRAVPKVLVV
LTDGRSQDDVHKVSKEMQIEGYIVFAIGFADADYGELVSMASKPSERHVFFVDDLDAFRK
IEEKLVTFVCESASATCPSVPMRGSTMPGFRMMEVFGLTEQQYSSLDGVSMEPGTFNAFP
CYKLHKDAFIVQPTRFVHPEGLPSDYTITMLFRLLPETPEEPFALWEILNESNEPLVGVI
LDHGGKTLTFFNNDYRGEFQTVTFEGPQIKQLFFGNFHKLHLVVSKTAVRAMIDCKLVGE
RPVNAAGNITTDGVEVLGRMVRSRGQKDNSAPFQLQSFEIVCSTSWASRDRCCDLPSLRK
EEDCPALPRACTCAQDSKGPPGPPGPPGGSGIRGARGERGEPGPVGLGGPVGDAGLPGLQ
GPPGPQGPSGRTIMGPPGGPGERGQKGDAGPPGTQGNPGTTGPRGNAGPPGPRGQTGKDG
PQGRQGPPGNIGGPGNPGAPGQNGPPGPTGEQGPPGAAGGKGEKGERGDVQSTSNVQAIA
RQVCEQLIQSHMARFSSVLNHVPSAPVSVRTVPGPPGEPGRAGPRGPQGEQGAPGRPGFP
GSNGENGQPGARGLAGEKGEKGSQGVGVQGPRGPSGPPGPPGEGRTGSTGPSGRPGNPGT
SGRPGIPGPVGPAGPPGYCDQNSCIGYNIGAQVPGAYQPYDPREHDEPEGGYNYGVAYGS
EYYQPNYPAPRPVSPDDPLLEADGATELRSPGVHRSSRSLAEVSESAAMAARDRPLGQKG
DARTADIH
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtggcagggttcagctctctgctgattttgacttctgtatggcttgtacccctg
ccggtgcagggtcaagttccatctccacgaagattacgttttaaagttttgggcacagac
aaactcagcgtgtcttggaaagagcccaaaggagatattgagggctataagctgttctat
aacacagagtcaggtaaagaggtaaaggaattacggacacctaagaatgaggcgaaggct
gtgatagagaactttgatcctgaccaggagtacaacattaaggttgtagctgttcgtggg
aaccaggagagcaagccactggtgggacagtacaaggcacaaggcacaagcacagatgca
agtaatgacattgtgcaaccacagaagcagaaagacccctcggctaatgaggaggacaat
gagatcagagaagtggaccagtttacatgtagaatcccggccactgcggacattgtgatc
ctggtcgatggctcctggagtattggccgcatcaatttccgcctggtccgagcatttctg
gagaacttggtcagtgctttctcactgggttcagaccagaccagaattggtttggctcag
tacagtggtgacccacggatcgagtggcatctgaatgcccacacgaccaaacagtctgtg
attgacgctgtgaagaccctgccgtacaaaggaggcaacacactcactggccttgcattg
acgtacatcttggagaacagtttcaagccggagtcaggcgccaggacgggcattcccaaa
attggcatcctgatcacggatgggaaatcacaggacgatgtgcagcctcctgcccagagt
ctccggaatgcaggaattgagctgtttgccattggtgtgaagaacgccgacgagaatgag
ctgaaggccatcgcctctgctcctcaggagacccacgtgtataacgtggcagacttcagc
gacatgagcagcatcgtggaaagcctcacccgcaccatctgtgatcgcgtcgagcagctc
aataaggatctcaaaggagagtctccgcagccagagagccccgctcccccgcgtgacctg
gtgacctctgaggtgacggcacggagcttccgagtgacctggacacatgcgcccggcgcg
gtcgagaagtatcgcgtggtgtactaccctgccaaaggagacaagccagaggaggtggtg
gtgaacggcaacgagaacacggtggtgctgcgctacctgaactccctgaccgagtaccag
gtggccgtgttcgccgtctacagcaacaccgccagcgaagcgctccgcggcaccgcgacg
acactggccttgcccatggtggacaacctggagctcttcgacgtcactcacaacagcatg
caggtccgctggaagggcgcggcgggcgcctcgggttacatgatcctctacgccccgctc
acagagggggacccggccgacgagaaagaggtgaaagtagcggacactgtgacagaggtc
gagctggagggtctgaccccagacaccgaatacacagtgaccgtctacgccatgtatgga
gacgacgccagtgaccctatgaccagtcaagaaaccacattgccgctctctccggcgcgg
aaccttcgcatcacggacgtcagccacagcactgcccagctgagctggaacgaagcgtcc
cggaaggtcagaggttaccgcattgtctatgtgaagaccaggggcgcagagaccaaagag
tttgaggtgggacccatcaccactcagctgctgcagaatctgacctcgctgacggagtac
actgtggccatctacgccaaatatgccgagggtccctctgaagctctcaggggcagcttc
accaccaagacggttccggagcctttgaatgggcaaaccaaagaggtcggcgagaccagc
ttcagggtcagctggcggcaccctgccacagacatcgtcctgtacaaactcctgtgggga
gagagcgacggcgagggagaccttgaagaggtgatggtgaatgcccagaccaacacctac
cttgtgactggcctgaagcccgacactgagtacgaggtgtccctctccgccatctacagg
gacgagtcggagagcgagtctgtcatcctggtagaaactactgtggcaggaaccgcaacg
gtcaggaccaccaccaccacaactgcagtggcgcgtcaggccataaggaacatgcagatc
agtgatcagaccaccttcagcttccaggtgtcttgggagcaacaggaccccaatgtccgc
cagtaccgcgtcgcctacgtgacggcccaaggggaccgcgcagaggaggtgaaaatgatc
ccaagccaacagaagagcattctgctccagtctctgctctccgacacagagtacagagtg
accgtcacccctgtctacgccgaaggaccaggccccgtcatggcccggacgggccgcacc
ttgccgctgacttcgcctaggaatctaaaagtgtctgaggagtggtacaaccgtttccga
atcacctgggatacacctccctctcccaccatgggctacagaattgtctaccagcccatc
tcagccccgggccgtgccctggagacgtttgtgggtgaagacgtgaacaccatcctgatc
ctcaacctgctcaccggtactgagtacagcgtcaaggtcatcgcctcctacaccacgggc
tccagcgaggcactcgttgggaaggccaagaccttgtacctgggcgtgaccaacctgaag
acctaccaggtgcgaaccaccagcatgtgtgcccagtggcagccccatcgccatgccacc
ctgtaccgcgtcatgatcgagtccattctcaatggagagaaacaggaggcgtcgctggga
gggggcgcgaccagacactgctttaacaacctgaagcccaacacggactacaagatcagc
atctacgcccagctgcaggagaccgagggacccgctgtcaccaccatccagaagacattc
cccctgcctaccgcagctccgacgagaccccccaccaccccacctccccccactgtgccc
ccagccaaagaagtttgtaaagcagccaaggctgatctcgtcttcttggtggacggctcc
tggagcattggcgatgacaacttccagaagatcatccgtttcctgcacagcaccacgggg
gcgctcgaccagatcggcccagatggcacacaggtggcaattgctcagttcagcgacgat
gccaggacggagtttaagctcaactcgtacaacaacaaggagcggctgctggaggcgatt
cagcgcatcgcttacaagggaggcaacaccaaaacagggaaagccataaagcacgtaaag
gacaccatcttcaccgcagagggcggcatcagaagggccgtccccaaagtgctcgtggtc
ctcacagacggacgttcccaggacgatgtccacaaggtttccaaggagatgcaaatagag
ggttacatcgtttttgccatcgggttcgcggacgccgactacggggagctggtgagcatg
gccagcaagcccagcgagaggcacgtcttctttgtggacgacttggacgcgttccggaag
attgaggaaaagctagtcacttttgtatgcgaatctgcatctgcaacttgcccatctgtg
ccaatgagaggcagcactatgccaggctttaggatgatggaggtgtttgggctgacagag
caacagtacagcagccttgacggggtgtccatggagccgggcacattcaacgcgttcccc
tgctacaagcttcacaaggatgccttcattgttcagcccaccaggtttgttcacccagag
ggcttgccttctgactacaccatcaccatgctgttccgcctgctccccgaaacccccgag
gaaccgttcgctttgtgggagatcctcaacgaaagcaatgagccccttgttggtgtaatt
ctagaccatggcgggaagactctcactttcttcaacaacgactacagaggagagttccag
accgtcacctttgaggggccccagatcaagcagctattcttcggcaatttccacaagctc
cacctagttgtcagcaagaccgccgtcagggccatgattgactgtaagctggtgggggag
aggccggtgaacgcggcagggaacatcaccaccgacggagtagaggtgctgggaaggatg
gtgcgctccaggggtcaaaaggacaattcagcaccattccagctccaatccttcgaaatc
gtctgcagtacatcctgggccagccgggacaggtgctgtgatctcccatccctgaggaag
gaggaggattgcccagctctcccacgtgcatgcacctgcgcacaggacagcaaaggccca
ccgggaccccctggacctcctggcggctctggaattagaggagcaagaggagaacgagga
gagccgggccctgtgggtctaggtgggccagtgggagatgcagggcttccagggcttcag
ggaccccctggcccacagggaccaagtgggaggaccatcatgggacccccgggtggccct
ggtgaacgtggtcagaaaggggacgcaggccctcctggaactcagggcaacccaggtaca
accggaccacgtgggaacgcaggacccccagggccgaggggccagactgggaaagatgga
cctcagggacgacagggtcccccaggaaatattggtgggccaggaaacccaggggcgcca
ggacagaacggaccacctggcccgaccggagaacaaggcccgcctggtgccgctggaggg
aaaggagaaaagggtgaacgaggtgatgtccagtccacgtctaacgttcaggctattgca
cgacaagtctgtgaacagcttatacagagtcatatggcgcgcttcagctctgtcctaaac
catgtcccgagtgcgcccgtgtccgtccgcacagtccccggacccccgggtgagccgggc
cgggcgggaccgcgcgggccgcagggagagcagggtgctccaggacggcctgggttcccg
ggcagcaacggagagaatggccaaccaggagccagaggtctggcgggtgagaagggggag
aagggaagccaaggcgtcggtgtgcaaggtcccagagggccctcaggtccaccaggaccg
cccggagaaggcaggactggtagcacaggcccatctggtcgtccgggcaaccctggtact
tccggccgacctggcatcccgggccctgttggaccagctggtccccccggctactgtgac
cagaactcctgtataggctacaacataggagcccaagtgcccggtgcctaccaaccgtac
gaccccagagaacacgacgaaccggagggtggctataactacggcgtggcctacggctca
gagtactaccagccgaactacccagccccccggcccgtctcccccgacgaccctctgctg
gaggcggacggagccaccgagctccggtcccctggcgtccaccgctcctcgcgcagcctg
gccgaggtatcggagagcgccgccatggcggctcgggaccgtccgctcggccagaaggga
gacgcgcgaactgctgacatccactga
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