Sardina pilchardus (sardine): 134075130
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Entry
134075130 CDS
T10667
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03030
DNA replication
spil03410
Base excision repair
spil03420
Nucleotide excision repair
spil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134075130 (rfc1)
03410 Base excision repair
134075130 (rfc1)
03420 Nucleotide excision repair
134075130 (rfc1)
03430 Mismatch repair
134075130 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spil03032
]
134075130 (rfc1)
03400 DNA repair and recombination proteins [BR:
spil03400
]
134075130 (rfc1)
DNA replication proteins [BR:
spil03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
134075130 (rfc1)
DNA repair and recombination proteins [BR:
spil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
134075130 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_33
AAA_5
Rad17
AAA_7
AAA_30
RuvB_N
AAA_14
AAA_16
AAA_17
RNA_helicase
nSTAND3
RCF1-5-like_lid
BRCT_2
NTPase_1
AAA_18
AAA_19
NPHP3_N
PoNi_C
AAA_28
SKI
Motif
Other DBs
NCBI-GeneID:
134075130
NCBI-ProteinID:
XP_062386615
LinkDB
All DBs
Position
2:complement(41770854..41782333)
Genome browser
AA seq
1148 aa
AA seq
DB search
MDIRRFFAPTKPAPPKAPLNSSSSSRTDEEKKPNKKKSASKTPEEKLPGKRKREKKRAVI
DSDSDEEEQKQRKSKKEHQKEKADPPVKTEKEKKGPIQYVSDSDSDDAFLSLKKPVENGL
KKAGKDADKKTQKGPTKVPIKSSPKSPVKSPTISKPKQKVVLSPKQTPTSVLDFFGSSSV
QRSDKKLVASVKRKAPTQDLDESQDDEVIAKQLQMDEDMELEKQIHEDEEFARTLAMLEE
APLAKKARTDTGDRPSSSSSSSFSPSKQKDRTEQPSQSQKRPSPKKEAASPSSQTSKTDT
LKKTSSKLASMKRRDEEQETRKKSEKEEKKEEKKLISPKKEPVHSERAATPRTGGPSTPK
TGDLTPKTGSAETPGSSKISPKKPETSPEDSEKRRGNSAAFRNYLNRDGPRALGSKEIPV
GAENCLEGLTFVVTGVLESIERDDVKSLLERYGGKMTGNVSRKTSYLVVGRDGGASKTEK
AESLGTTIIDEDGLLELIRTKPGKKSKYVIAAEAENKGMKSKTKTPPRAQTPRTPQRTPS
PRKPRPGEVKGQTTPGRKMASTTDVKKELSFGRKAAPEDDGSSLMWVDKYRPQTLKNVIG
QQGDQSCASKLLRWLKNWYSNHSGEKPAAARFGRFGGKDDGSSFKAALLSGPPGVGKTTT
AALVCQELGYSYVEMNASCARSKNTLKQVIAESLNNTSIKNFYSGASQTVSKKHVLIMDE
VDGMAGNEDRGGIQEMISLIKSSKIPIVCMCNDRNHQKIRSLSNYCFDLRFQRPRVEQIK
GAMMSICYKEGLKIPPPALNEIILASNQDLRQVLHNLSMWSAKDKVMTYDQVKEDAKNAK
KDMKMGPFDVCRKVFTKGDETAHMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNL
KSHLVLLSRTADSICDGDLVDRQIRSKQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPS
WLGKFSSTGKHSRIVQDLASHMCLRTQCSKQAVNLDYLPYLRSALLEPLQRAGAEGASQS
VQLIDDYNLIKEDVDSMMEISTWGGKPDPYSKLDPKVKAAFTRAYNKESHLTPYSLQAVK
KGKRGATEPDLTSPDGENNSQAQEEEEEEEPADAMIKQKKAKPVKPKAEDSGKGKGKGKG
KGKGKGKN
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggagattttttgctcccacaaaaccagctcctcctaaagcccccttgaac
agcagcagcagcagcaggacagatgaggagaagaagcccaacaaaaagaaatcagcgtcc
aagaccccagaggagaagctgcctggaaagagaaagagggagaaaaagagagcggtcata
gactctgactctgacgaagaggagcagaagcagaggaagtcaaaaaaagaacatcagaaa
gagaaggcagaccccccagtgaagacagagaaggagaagaaaggacccatccagtatgtg
tctgactcagattcagacgatgcatttctgtccttgaagaagccagtggagaatggcctt
aagaaggctggcaaagatgctgacaagaaaacacagaagggccccactaaagtgcccatt
aagtcatctccaaaatcacctgtcaagtcccctactatatccaaacccaagcaaaaagtg
gtactctctcccaaacaaactcccacctcagtactggacttctttggatccagcagtgtc
cagcgttcggacaagaaacttgtggccagtgtcaaaaggaaagcacccactcaggatcta
gatgagtctcaggatgatgaggtcatcgcaaaacagctacagatggatgaggacatggag
ctggaaaaacaaattcatgaggacgaagagttcgcccgaactctagctatgctagaagag
gctccacttgctaaaaaggctcgtacggacactggtgacaggcccagctccagctccagc
tccagcttctctcccagtaaacagaaggacaggacggagcagccaagccagagccagaag
cggccctcacccaaaaaggaggcagccagccccagcagccagaccagtaagacggacact
ctcaagaagaccagctccaagttggcctccatgaagcgccgagatgaggagcaggagacc
aggaagaagagtgagaaggaggagaagaaggaggagaagaagctcatctcgcccaaaaaa
gagcccgtccactcggagagagcagccacacccagaacaggaggtccaagtacgccaaaa
accggtgaccttacgcctaaaacaggaagtgctgaaacacctggctcaagcaagatctct
cctaaaaagccagagactagtccagaggattcggagaagcgccggggaaattccgctgct
ttccggaactacctcaatagagacggtccacgtgcacttggctccaaagaaatccctgtg
ggtgctgagaactgtctggaggggctgacgtttgtggtgactggtgttctggagtcgata
gaacgtgatgatgtcaagtctctcttggagcgctatggagggaaaatgactggaaacgtc
agcaggaagaccagctatctggtggtggggcgcgatggaggagcctccaagactgagaaa
gcagaaagtttgggcactacgatcatcgacgaagatggcctactggagctgattcggacc
aaacctggaaagaaatccaaatatgtgattgctgcagaggcagagaataaagggatgaag
agtaagactaagacccctcctcgtgcccagaccccaaggactccgcagcgcacgcccagc
ccgaggaagccccgcccaggagaggtcaaaggtcagaccaccccggggcgtaaaatggcc
tcgacgacagatgtgaagaaggagctctcttttgggcggaaggctgccccagaggatgat
gggagcagtctgatgtgggtggataaatatcggcctcagaccctgaagaatgtgattggg
caacagggcgatcagagttgtgcgtctaaactcctgcgctggctcaagaactggtacagc
aaccacagtggagagaagcctgccgcagcgcgctttggacgctttggaggtaaagacgac
ggatcttcttttaaggcagcgttgctgtcaggccctcctggtgtaggaaagaccaccact
gcagctcttgtgtgtcaggagttgggctacagctatgtggagatgaacgccagctgtgcg
cgcagcaagaacacgctcaagcaggtgatcgctgagtctctgaacaacaccagcatcaag
aacttctactcaggtgcatctcagacggtcagcaagaaacatgtgctgatcatggatgag
gtggacggcatggcgggaaatgaagacagggggggaattcaggaaatgatttctttaata
aagagctccaagatccccatcgtgtgcatgtgtaacgaccgtaaccaccagaagatccgc
tccctctccaactactgctttgacctgcgcttccagaggccacgcgtggagcagattaag
ggtgccatgatgtccatctgctacaaagagggcttgaagatcccgcctccagctctcaat
gagattattttagcctccaaccaggatctccgacaggttctgcataatctcagcatgtgg
tccgccaaagacaaggtcatgacctatgaccaggtcaaagaagacgccaagaatgcaaag
aaagatatgaaaatgggtccgtttgatgtgtgccggaaagtgtttacaaagggagacgag
acagcgcacatgagtttgattgacaagtcagacctcttctttcacgactattctctggcc
ccactcttcgtccaggagaattatgtacacgtcaaacccgctgcagcaggtggtaacctg
aagagccacctggtgctgctgagcagaactgcagacagcatctgtgacggagacctggtg
gaccgacagatccgctccaagcagacctggtccctgctgcccacacaggccatctatgcc
agtgtgctgccgggggagttgatgcgtggctacatgagccagttccccacgttccccagc
tggctgggcaagttctcctccacgggcaaacacagccgcatcgtccaggacctggcctct
cacatgtgcctgaggacccagtgcagtaagcaggcggtgaacctggactacctgccctac
ctgcgctcagccctgctggagcccctgcagcgcgcgggcgccgagggagccagccaatca
gtgcagctcatcgacgactacaacctcatcaaggaggacgtggacagcatgatggagatc
agcacgtgggggggcaagccggacccctactccaaactcgaccccaaggtgaaagcggcg
ttcactagagcctataacaaggagagccacctgacgccgtactcgctgcaggccgtgaag
aagggcaagcggggagccactgagcctgacctgacctcgccggacggagaaaacaactcg
caggcacaggaggaagaggaggaggaagagccagctgatgccatgatcaagcagaagaag
gctaagcctgtgaaacccaaagcagaggactctggcaagggcaaaggcaaaggcaaagga
aaaggaaaaggaaaaggcaagaactaa
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