KEGG   Sardina pilchardus (sardine): 134075227
Entry
134075227         CDS       T10667                                 
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03030  DNA replication
spil03410  Base excision repair
spil03420  Nucleotide excision repair
spil03430  Mismatch repair
Brite
Enzymes [BR:spil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     134075227 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     134075227 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     134075227 (lig1)
DNA replication proteins [BR:spil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    134075227 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     134075227 (lig1)
DNA repair and recombination proteins [BR:spil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     134075227 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     134075227 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     134075227 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 134075227
NCBI-ProteinID: XP_062386766
LinkDB
Position
2:complement(45012421..45038857)
AA seq 1046 aa
MQRSIASFFQPMKGKEKNDGQVKVKSESVKSPLKLQNGNQEVDSPVKKLSKRSRQILDSD
DEEQTAGKEQVANQVKGDAGDKPTKEHTANQVKGDAGDKPTKEQESDPKATPTPLSPKTP
VSPATPMTPVTPAALVASATPVTPSSESPSGVPKRRTARKQFPKRKLESRSDGETEKEEE
NEGKKEGGQESKRARTDQSQEPTDKEEEQMEVENGDGQITEDTEGGEKPTAEVKKEREEE
EEGMKEETKDESPAGSPQVRKKGGEKEDKKRKSSESPEGKKGGKKEDKKRKSGESPEGKK
RGEKEEDKKRKSGESPRAVKKGETEEKKEKEKKEKKEKKEKEAVKKTAALSSFFTPRKAA
VKLEKVEQTDEEKKPVPSEEKDSHSAKGAESVDQYDPSRAHYHPIDHACWGRGQKVPYLA
VARTFEKIEEDSGRLRNIETLSNLLRSVILLSPDDLLCCVYLCLNQLGPAYLGLELGVGE
TVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTTRGVFIKLKEI
ASMSGNSSMTKKIDIIKGLFVACRHSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLTP
PGQEFPPAVVDAGKKMSTESRKSWLEEKSLILKQTYCEMPNYDVIIPVLLKEGIDELPNH
CRLTPGVPLKPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRIYSRNQ
EDNTTKYPDIIARIPQVKKASVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDAADI
KVQVCVYAFDLLYLNGKSLVREPLCARRALLRESFEEQEGQFVFARSLDSHSTDTIAEFL
EQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVVGAYLGKGKR
AGAYGGFLLACYDDDNEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAE
PDVWLDAVQVWEVKCADLSLSPIYKAAMGLVDPVKGISLRFPRFLRIRDDKKPEDATSAS
QVADLYRRQQQIQNQGDKSGDLEDYY
NT seq 3141 nt   +upstreamnt  +downstreamnt
atgcagcggagtattgcatctttcttccagccaatgaaaggcaaggagaagaatgatgga
caggtgaaggtgaaatcagagtcggtgaagagtccactcaaactccagaacggtaaccag
gaagtggactctccggtgaagaagctgagcaagcgcagccggcaaatcctggacagcgac
gatgaagagcagaccgctgggaaagagcaggtggccaatcaggtcaaaggagacgcagga
gacaagcccaccaaggagcacacggccaatcaggtcaaaggagacgcaggagacaagccc
accaaggagcaggagtctgatcctaaagccacacccacccctctctcgccaaagacgcct
gtttccccggcaactcctatgaccccagtgaccccagctgcgttggttgcctcggcaacc
ccagtcaccccctcctccgagtccccctccggcgttcccaaacgcaggacagcgaggaag
cagttccccaagaggaagctggagagccgcagtgatggagagacagagaaggaggaggag
aatgaagggaagaaggagggaggacaggagagcaagagagccaggacagaccagtcccag
gagcccacagacaaagaggaggagcagatggaggtggagaatggagatggacagatcaca
gaagacacggagggaggagagaagcccacagcagaggtgaagaaagagagggaggaggaa
gaggagggaatgaaagaagagacgaaagacgaaagccctgcaggaagtccccaggtgcgg
aagaagggaggagagaaggaggacaagaagaggaagagctcagagagtcctgaggggaag
aagggaggaaagaaggaggacaagaagaggaagagtggagagagtcctgaggggaagaag
agaggagagaaagaggaggacaagaagaggaagagtggagagagtcccagagctgtgaag
aagggagagacagaggagaagaaagagaaggagaagaaagagaagaaggagaagaaagag
aaggaggcagtaaagaagacggcggctctcagcagcttcttcactcccaggaaggctgca
gtgaagctggagaaggtggagcagactgacgaagagaagaagcccgtcccctctgaagag
aaggacagccacagtgctaaaggggcggagtctgtggaccaatacgatccctccagggct
cactaccaccccatagaccatgcctgctgggggcgtggccagaaagttccctaccttgca
gtggctcgaacgtttgaaaagattgaagaggattcgggaaggttgaggaacattgagacc
ttgtcaaacttactgcgttcagtcatcctactgtctccagatgatctcctgtgctgtgtg
tatctgtgcctgaaccagcttggtcccgcctatctgggcctggagctgggcgtcggggag
acggtcctgatgaaagctgtcgcccaggcaacaggacgacagctggacaagatcaaggcg
gaggcccaggagaaaggagacctgggattggtggccgagagttcccgtagcaaccagaga
atgatgttcgccccagccaatctgaccaccaggggcgtgttcatcaagctgaaggagatc
gccagcatgagcggcaactcttccatgactaagaagattgacatcatcaagggtctgttc
gtggcgtgcaggcactctgaagccagatacatcgtcaggtctctggcgggaaagctgcgg
attggcttggctgagcagagcgttctggcagctctgagtcaggctgtgtgtctcacccca
cctggacaagaattccctcctgcagtggtggatgctgggaagaagatgagcacagagagc
cgcaagtcctggctggaggagaagagcctgatcctcaaacagacctactgtgagatgccc
aattatgatgtcatcattcctgtcctactcaaggagggcatcgacgagctgcccaatcac
tgcaggcttactccaggtgttcccctgaagcccatgctggctcaccctactaagggagtt
ggggaggtgatgaagaggtttgatgaggccgccttcacctgcgagtacaagtatgatgga
gaaagagcacagatccacatcctggagagtggggaggtacgcatctacagccgcaaccaa
gaggacaacaccaccaagtaccccgacatcatcgcacgcataccacaggtgaagaaggcg
tcggtggtgtcgtgtgtgttggactctgaggcggtggcctgggaccgagagaagaagcag
atccaacccttccaggtcctcaccacccgcaagaggaaggatgtggatgcagcagacatt
aaggtgcaggtgtgtgtgtacgccttcgatctgctctacctgaacggcaagtcgctggtg
cgtgagccgctgtgtgcgcggagggctctgttgcgggagagctttgaggagcaggagggt
cagttcgtcttcgcccgctccctcgactcccacagcaccgacaccatcgccgagttcctc
gagcagtccgtgcgagactcttgtgagggactgatggtgaagactctggagaaagatgcc
acctacgagatcgccaagcgctcacacaactggctcaagctgaagaaggactacctggag
ggggtgggggacacggtggacctgtgtgtggtgggggcgtacctgggcaagggcaagagg
gccggcgcctacggaggcttcctgctcgcatgctacgacgacgacaacgaggagttccag
tccgtctgcaagattggaactggtttcaaggatgaggacttggagcaacattacaatttc
ctaaaggaacacattctgcccaaaccccgcccctattaccgtgtggaccaatcagcagag
ccggatgtgtggttagacgctgtgcaagtgtgggaagtgaaatgtgccgacctatcgctg
tctcccatctacaaagctgcaatgggattggtggacccagtgaagggcatctccctccga
ttcccacggttcctacggatacgagacgacaagaagccagaggatgccacctcagcatct
caggtggctgatttgtataggcgacagcagcagatccaaaatcagggagacaaatcaggc
gacctcgaggactactattga

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