Sardina pilchardus (sardine): 134076358
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Entry
134076358 CDS
T10667
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134076358 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spil03021
]
134076358 (cpsf4)
03019 Messenger RNA biogenesis [BR:
spil03019
]
134076358 (cpsf4)
Transcription machinery [BR:
spil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134076358 (cpsf4)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
134076358 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCCH_12
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
134076358
NCBI-ProteinID:
XP_062387347
LinkDB
All DBs
Position
3:3584676..3587367
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AA seq
267 aa
AA seq
DB search
MQELIATVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRASCMKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGRSCKFMHPRFELPMGATEQPP
LPLQSHTQQKTMQSTNRSSLSLIQLTNINSNNQQRMPHNIGPMNSQNNMGGNRGPRPLDQ
VTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctgatagcgactgttgaccaccttaaatttgatctggagattgctgtagag
caacagctgggtgcccaaccgttgccttttcctggaatggacaaatctggtgctgctgta
tgtgaattcttcatgagggcatcttgcatgaagggtggcatgtgtcccttccgccacatc
agtggagaaaaaacagtggtttgcaaacattggcttcgagggttatgcaaaaagggggac
cagtgcgagttccttcatgagtatgacatgaccaagatgcctgagtgctatttttattcc
aaattcggagagtgcagcaacaaagaatgtccctttctacacattgaccctgaatccaag
ataaaagactgtccatggtatgaccgaggattctgtaaacatggcccggattgtagacac
agacatacacgaagagtcatttgtgtcaactaccttgttggcttctgtccagaggggagg
tcctgcaagttcatgcacccacgttttgagttgccaatgggtgctactgaacaacctcct
ctgcctctacagtctcatactcaacagaagaccatgcagtccacaaacaggtcgtcactg
tcattgattcagctgaccaatataaattctaacaaccaacaaaggatgccgcacaatata
ggaccaatgaactctcaaaacaatatggggggaaaccgaggtcctcgtccattagatcaa
gtcacctgttacaagtgtggcgagaagggtcattatgccaacaagtgtacaaaaggacat
ctggctttcctcagtggacagtag
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integrated database retrieval system
