Sardina pilchardus (sardine): 134076848
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Entry
134076848 CDS
T10667
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134076848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134076848
03009 Ribosome biogenesis [BR:
spil03009
]
134076848
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134076848
Spliceosome [BR:
spil03041
]
Complex A
U1 snRNP components
U1 related factors
134076848
Complex B
134076848
Ribosome biogenesis [BR:
spil03009
]
Eukaryotic type
Pre-60S particles
Helicases
134076848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134076848
NCBI-ProteinID:
XP_062388089
LinkDB
All DBs
Position
3:15852610..15859040
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AA seq
629 aa
AA seq
DB search
MPGYSDRDRGRDRGYGGNFGGSRGRYGSSPPRFGGGRGGGQGKKFGNPGEGLRKKHWNLD
ELPKFEKNFYKEHPDVTRRSPQEVEQYRRTKEVTVKGRDCPNPILQFYEASFPSYVMDVI
NKQNWPNPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI
CLVLAPTRELAQQVQQVAAEYGKASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLI
DFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL
AEDFLREYVQINVGALQLAANHNILQIVDVCNDAEKDGKLLRLLEEIMSEKENKTIIFVE
TKRRCDELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRFGKAPILIATDVASRGLDVED
VKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPANMKQAGDLVSVLREANQAINP
KLIQMAGDRGGRGRGGRGGHDRDRYSSGRRDFGSFRDRDNDRGYDNGPKKAFGSKTQNGG
GYGSNGSFNGSGANSYGSGGYSNNGQSNLGAPFGGQNFQNQQFGSTNQAAGMQNGMTQPQ
FPFNPQQQPPQPMAQPLMPFPPMPPSFPQ
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattctgacagagatcgcggcagagacagagggtatggcggcaattttgga
ggcagccgaggcagatacggcagcagcccaccacgttttggaggcggccgtggaggaggc
cagggaaagaagtttggcaatcctggcgaggggctgaggaagaaacactggaatctagac
gaactgccgaaattcgagaagaatttctacaaagaacatcctgatgttacacgcaggtca
ccgcaagaggtagaacagtaccggaggaccaaggaggtaacagtgaaaggaagagactgt
cccaatcccatcctacagttttatgaagccagtttcccctcatatgtaatggatgtcatc
aacaaacagaactggcccaacccaacacctattcaggctcagggttggcctttggctttg
agtgggaaggatatggttggcattgcacaaactggctcagggaaaaccctttcttatctt
ctacctgcaattgttcacattaaccatcaacctttcctggaacgtggagatggtcctatt
tgtttggttctggcccctacccgtgagcttgcacagcaagtccagcaggtggcagcagag
tatggcaaagcgtctcgccttaagaccacctgcatctatggaggggcacctaaaggacct
caaatccgtgatttggagaggggtgtagaaatttgcattgctacaccaggaagacttatc
gacttcttggaggttggcaaaactaacctgcgtcgctgcacttacctcgtgctggatgag
gctgacagaatgctggacatgggttttgagccccagatccgcaagatcgttgaccagatc
aggcctgacagacagaccctgatgtggagtgccacctggcccaaagaggttcgccagctc
gctgaggacttcctgcgggagtatgtgcagatcaacgtgggtgccctgcagctggctgca
aaccacaacatcttgcagattgttgacgtgtgcaacgatgcggagaaggatggcaagttg
cttcgtctcctggaggagataatgagcgagaaggagaacaagactatcatttttgtagag
acaaagaggcggtgtgatgaactaaccaggcggatgaggagggatggatggccagcgatg
ggcattcatggtgacaaaagccaacaggagagagactgggtgctcaatgagttcagattc
ggcaaggctcccatactgatagccacagacgtcgcttccaggggtctcgatgtggaagac
gtgaagtttgtcatcaactacgactaccccaacaactctgaagactacattcaccgaatc
ggccgcacggcgcgtagtcagaagactggaacggcctacaccttctttactccggccaac
atgaagcaggcgggagacctcgtctctgtcctacgcgaggccaatcaggccatcaacccc
aagctcatccagatggcgggggacagaggaggtcgaggccggggaggcagaggtgggcat
gatcgagaccggtactccagcggcaggcgggactttggcagcttcagggaccgcgataac
gaccggggttatgacaacggaccaaagaaggcctttggcagcaagactcaaaatggaggg
ggatacggctcaaatggcagtttcaacggcagtggggcaaactcctatggtagtggtggc
tacagcaacaatggacagtctaaccttggggctccatttgggggccaaaatttccagaat
cagcaatttggtagtaccaaccaggcagcaggaatgcaaaacggcatgacccaaccccag
ttcccttttaatcctcagcaacagccgccccagccaatggcacagccattgatgcccttc
cccccaatgcccccatcgttcccccagtaa
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