KEGG   Sardina pilchardus (sardine): 134076913
Entry
134076913         CDS       T10667                                 
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
spil  Sardina pilchardus (sardine)
Pathway
spil03013  Nucleocytoplasmic transport
spil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134076913 (thoc6)
  09122 Translation
   03013 Nucleocytoplasmic transport
    134076913 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spil03019]
    134076913 (thoc6)
   03041 Spliceosome [BR:spil03041]
    134076913 (thoc6)
Messenger RNA biogenesis [BR:spil03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     134076913 (thoc6)
Spliceosome [BR:spil03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    134076913 (thoc6)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_NOL10_N Beta-prop_WDR5 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz ANAPC4_WD40 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_SCAP WD40_Gbeta WDR54 NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd DSE1_N TRM82_WD EIF3I CFAP251_N Beta-prop_IP5PC_F Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_ACSF4 Tricorn_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_EIPR1 CATSPERD-E_C Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_WDR75_1st
Other DBs
NCBI-GeneID: 134076913
NCBI-ProteinID: XP_062388189
LinkDB
Position
3:17248613..17253317
AA seq 323 aa
MGPIELLHMSVFSQSFSPCGRFLAVGNNYGEIALFSLSSALSPEATDLSQKPILTFTAHE
GPVFSLLSTDSQLLSAGNGEISAWNWSELIKRNSKAVWTRRPNYKTSLEIPEINAMVHSP
KDNSLIVGGGDNNIHILDLESGVFKLVLQGHSDYIHCLTVREREGEILSGGEDGAVRIWD
SRTAQSVHCIEVHKYQECARPQLGRWISCLTTDSDWMLCGGGPSLSLWHLRSMSPTSVFP
IAGCQRQAMFYQDLILSVGEGPYLYHCLLGGQVKAQIPCTSPSLNTLALNVHPSEPRVMT
LGGSSDHIDVFTNLSYRAFSLSF
NT seq 972 nt   +upstreamnt  +downstreamnt
atggggcctatagagcttctccacatgtcggtgttctcccagagcttctctccttgcgga
cgtttcttggctgtagggaacaactatggagagattgctttgttcagtctatcatctgct
ctcagtccagaggcgacagacctcagtcagaaaccaatcctcactttcacagctcatgag
ggtccagtgttttccctgctttccacggatagccagcttctgagtgcggggaatggcgag
atcagtgcctggaactggtctgaactcatcaaaaggaactcgaaggctgtatggacaaga
aggcctaactacaaaaccagtctagagattcctgaaatcaatgccatggtgcacagtcca
aaagacaacagcttgattgttggaggaggagacaataacattcacatcttggacctagag
agtggcgtcttcaagttggtgttgcagggccacagcgactacatccactgcctgacggtg
agggagagggagggagagatcctgtctggaggggaggatggtgcagtgcggatatgggat
tccaggactgcacagtcagtgcactgtatcgaagttcacaaatatcaggaatgtgcccgc
ccccagcttggcagatggatcagctgcctgaccacagactccgactggatgctctgtgga
ggaggcccgtctctgtctctctggcacctgcgctccatgtctcccacctcagtcttcccc
attgccggttgccagcgtcaggccatgttttaccaggacctgattttatcagttggtgag
ggcccctatctgtaccattgtttattgggaggccaagtcaaagctcagattccctgcacc
tctccatctctgaacacactggctctgaatgttcacccgtctgagccccgggttatgacg
ctagggggcagcagtgaccatattgatgttttcaccaacttgtcctacagagctttctcc
ttgtctttctaa

DBGET integrated database retrieval system