Sardina pilchardus (sardine): 134076913
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Entry
134076913 CDS
T10667
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog
KO
K13175
THO complex subunit 6
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03013
Nucleocytoplasmic transport
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134076913 (thoc6)
09122 Translation
03013 Nucleocytoplasmic transport
134076913 (thoc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134076913 (thoc6)
03041 Spliceosome [BR:
spil03041
]
134076913 (thoc6)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
134076913 (thoc6)
Spliceosome [BR:
spil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134076913 (thoc6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_NOL10_N
Beta-prop_WDR5
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_SCAP
WD40_Gbeta
WDR54
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
DSE1_N
TRM82_WD
EIF3I
CFAP251_N
Beta-prop_IP5PC_F
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_ACSF4
Tricorn_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_VPS8
Beta-prop_TEP1_C
Beta-prop_EIPR1
CATSPERD-E_C
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_WDR75_1st
Motif
Other DBs
NCBI-GeneID:
134076913
NCBI-ProteinID:
XP_062388189
LinkDB
All DBs
Position
3:17248613..17253317
Genome browser
AA seq
323 aa
AA seq
DB search
MGPIELLHMSVFSQSFSPCGRFLAVGNNYGEIALFSLSSALSPEATDLSQKPILTFTAHE
GPVFSLLSTDSQLLSAGNGEISAWNWSELIKRNSKAVWTRRPNYKTSLEIPEINAMVHSP
KDNSLIVGGGDNNIHILDLESGVFKLVLQGHSDYIHCLTVREREGEILSGGEDGAVRIWD
SRTAQSVHCIEVHKYQECARPQLGRWISCLTTDSDWMLCGGGPSLSLWHLRSMSPTSVFP
IAGCQRQAMFYQDLILSVGEGPYLYHCLLGGQVKAQIPCTSPSLNTLALNVHPSEPRVMT
LGGSSDHIDVFTNLSYRAFSLSF
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggggcctatagagcttctccacatgtcggtgttctcccagagcttctctccttgcgga
cgtttcttggctgtagggaacaactatggagagattgctttgttcagtctatcatctgct
ctcagtccagaggcgacagacctcagtcagaaaccaatcctcactttcacagctcatgag
ggtccagtgttttccctgctttccacggatagccagcttctgagtgcggggaatggcgag
atcagtgcctggaactggtctgaactcatcaaaaggaactcgaaggctgtatggacaaga
aggcctaactacaaaaccagtctagagattcctgaaatcaatgccatggtgcacagtcca
aaagacaacagcttgattgttggaggaggagacaataacattcacatcttggacctagag
agtggcgtcttcaagttggtgttgcagggccacagcgactacatccactgcctgacggtg
agggagagggagggagagatcctgtctggaggggaggatggtgcagtgcggatatgggat
tccaggactgcacagtcagtgcactgtatcgaagttcacaaatatcaggaatgtgcccgc
ccccagcttggcagatggatcagctgcctgaccacagactccgactggatgctctgtgga
ggaggcccgtctctgtctctctggcacctgcgctccatgtctcccacctcagtcttcccc
attgccggttgccagcgtcaggccatgttttaccaggacctgattttatcagttggtgag
ggcccctatctgtaccattgtttattgggaggccaagtcaaagctcagattccctgcacc
tctccatctctgaacacactggctctgaatgttcacccgtctgagccccgggttatgacg
ctagggggcagcagtgaccatattgatgttttcaccaacttgtcctacagagctttctcc
ttgtctttctaa
DBGET
integrated database retrieval system