Sardina pilchardus (sardine): 134077176
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Entry
134077176 CDS
T10667
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
spil01001
]
134077176 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
spil04054
]
134077176 (ciita)
Enzymes [BR:
spil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
134077176 (ciita)
Protein kinases [BR:
spil01001
]
Serine/threonine kinases: Other
TAF1 family
134077176 (ciita)
Pattern recognition receptors [BR:
spil04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134077176 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
AAA_25
nSTAND3
ABC_tran
LRR_8
VapE-like_dom
TsaE
AAA_22
Motif
Other DBs
NCBI-GeneID:
134077176
NCBI-ProteinID:
XP_062388589
LinkDB
All DBs
Position
3:complement(27059408..27080922)
Genome browser
AA seq
1283 aa
AA seq
DB search
MYEDSVKVTFDQVLDQVRWVLKEASPWELRSLFQKMLETQVFPNYHYLSLSEEAHCLSES
ACASETDQEDLARRMALPMWQRWDTCQGILQSVFIQEADSALEFTSTSCDTGNFWDSLTA
EIIESNVKENSDLLNDEDVDGFDEESALISLFSNRDLEHVNSDQDYGTQGDTEELELTLM
ETFFPVSESATEKGEAMLPPLLEPPDYFDHCMGLQEVHETCALTALPATKDSDSEQAPVS
QKSGGNRTLHKRSRCRKSQSKESDGACQPKRPKRTKATQKVKEIPADNLRDNSEYFQSVR
QVVALSSPQRFVPISPTAAIVPITSIANFNTATLLPSTGGAPTFQIIQTHSLSPTNATYI
LVPTTPQKQMPQIVPLSPISGTVAPELLVVSPGGSLSDSVNRCTPPEPITLSSPTTAIGS
LATPEREVTSPGSSLSDRTTPGETILSPTTETNPRESADVALNPPPEHVKEEPWYVGRYL
QHVKSCMRESCGELEKDRSVESHYVNVRLLQRTVMVKSGKNANKCLEKEMVILSDAEQKK
ATLTRKQVFADGQLRQKQVIALLGKPGAGKSAFVKRLCLDWAKDQLPRFRYVFSLDCKTL
NLTRPDYSLKTLLFHLPTSPRCEDPESVFKHVLSAPKEVLVILDSFEDFKDHEGLLHSPA
TCAEAGGYGVKQLFSGLFLKRLLKGCTLLIAARPCGGLTPLLRKVDSILELCGFSPAEID
LYASLYFAEDAPRGASSLTKLKLQKYIYSLCSNPLLCRYACFLLERSDGNKRFALPSTLT
GLALKVLSLCLKQTSEAQGRETPDMAQLCALAWESLSAHSSLVADERLDSAELRDYGLAS
EILTSHTVSRADGAAGETTGYAFSHALVQNLLASLHLVLSDSVSDKALVNQTLSTSRRRR
PQGEWLGMMQQFTAGLLFQNSKLPECGLAHSTAAPGGSAKKKAVEAHLDSLKSGEMAPAR
LLELCHCVYETGSKKLAKQLVKNLPDTLSLCGAQLTPPDVYVLWYLLQDTKALKRQFCLD
LQDTGITLSGLKELVGLNCVTSYRAPLADTITMWEEIEQSGESDLLRGAKNKLTLHPFKA
TQEDHICNLTVLIQSCRDPASLEHDIPAIRQLEKLDFELGPNIGPVIFPKLAQILPTLGS
LVHLDLEKNKIGDVGAELLADVLNSLLSLKKLNLSQNSIGDKGLEKLATALAATPSLQSL
SLYNNLIAENGAERLALVLPEMQTLTDLDVGFNNFTDVGAQKLSNSLKSCPWMKSLGLWN
HCIPYGILQHLHQQDKRIRIQHS
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggatagtgtgaaggtcacctttgaccaggtgctggaccaggtgagatgggtg
ctgaaagaagcttcaccttgggagcttcgctccctgtttcagaagatgttggagacacag
gtcttcccgaattaccactacctgtcgcttagcgaggaggcgcactgcctgtcggaaagt
gcctgtgccagcgagacggaccaggaggacctggcacgcagaatggcgctgcccatgtgg
cagagatgggatacctgccaggggattttacagtccgtgtttatccaggaagcagactcg
gctttggaatttacctccacgtcctgtgacacaggtaacttttgggactctttgaccgcg
gaaataatagagtccaacgtgaaagagaactcagaccttctcaatgatgaggatgttgat
ggttttgatgaggagagcgccctcatctctctcttcagcaatagagatttggagcatgtc
aacagtgatcaagactatggcacccaaggagacacagaagagctggagttgaccttaatg
gagacattctttccagtttcagaaagcgcaacagaaaaaggcgaggctatgcttccacca
ctacttgagcctccagactattttgaccactgcatggggctacaagaagtgcatgagaca
tgtgcattaactgctttaccggccaccaaagactcagactcagaacaggccccggtcagc
cagaagagtggaggcaacagaacactgcacaaaaggtcaagatgtcgtaaatcccaatcc
aaagaatcagatggtgcttgccaaccaaaaaggcccaagagaaccaaagccacacaaaag
gtcaaagaaatcccggcagataatttgagagacaattctgagtactttcagtcagtcaga
caagtggtcgccttgtccagtcctcaacggtttgttccgatcagtccgactgctgccata
gttcccatcaccagcattgctaactttaacacggccactctgcttccctctactggcggt
gctccaacatttcagatcatccagacccattcactaagccctaccaacgccacttacatc
ttggtacccacaaccccacagaagcagatgccccagatcgttcccctctcacccataagt
ggtacagtggccccagagctcctggtggtcagtccagggggctccttatcggacagcgtt
aacagatgcacacccccagagcccattaccctctcatcacccactacagccattggttca
ttggctacccctgagcgagaggtgaccagtcctggaagttcattatcagacagaaccaca
cctggagaaaccatcttgtctcccactacagaaactaacccccgtgaatcagctgatgtt
gccttaaatcccccacctgagcatgtgaaagaggaaccctggtatgttgggaggtacttg
cagcatgtgaagtcctgcatgagagagtcctgtggtgagctggagaaggacaggagcgtg
gagtcccactacgtcaacgtccgtctactccagaggacggtgatggtcaagtccgggaag
aacgccaacaagtgcctggagaaggagatggtcatcctcagcgacgcggagcagaagaag
gccacgctgaccaggaagcaggtgttcgccgacggccagctgaggcagaagcaggtgatc
gccctcctgggaaagcccggggcgggcaagagcgccttcgtcaagcgcctctgcctcgac
tgggccaaggaccagctgccgcgctttcgctacgtcttctcgctcgactgcaagaccttg
aacctgacgcggcccgactacagcctgaagacgctgctctttcacctccccacctcgccg
cgctgcgaggaccccgagtccgtgttcaaacacgtgctctccgctcccaaagaggtcctc
gttattctcgacagcttcgaggacttcaaggaccacgaggggctcctgcactcccccgcc
acgtgcgccgaggcgggcggctacggcgtcaagcagctgttctcgggcctcttcctgaag
cgcctgctgaagggatgcacgctgctgatcgccgccagaccctgcggcggcctgacgccg
ctgctgcgcaaagtggacagcatcctggagctctgcggcttctcgcccgccgagatcgac
ctgtacgcctcgctctatttcgcggaggacgcgccgcgcggcgccagctcgctgaccaaa
ctgaagctccagaagtacatctacagcctgtgctccaaccccctgctgtgccggtacgcg
tgcttcctgctcgagcgttcggacggcaacaaacgcttcgccttgccctcgaccctcacg
ggcctggcgctgaaagtgctctcgctctgcctcaaacagacctccgaagcgcagggcagg
gagaccccagacatggcccagctgtgtgcgctagcgtgggagtccctcagtgcgcacagc
tctctcgtggccgacgagcggctggactccgcggaacttcgggactacgggctcgccagc
gaaatactcacctcgcacaccgtcagcagggcggacggagcggccggcgagacgaccggt
tatgctttctctcacgccctcgtccagaacctcctggcctccctgcacctggtcctgtcg
gacagcgtgagcgacaaggcgctggtcaaccagaccttgagcaccagccggaggaggagg
ccgcagggcgagtggctgggcatgatgcagcagttcaccgcggggctcctgttccagaac
agcaagctccccgagtgtggcctcgcgcactccaccgccgcccctggcggcagtgccaag
aaaaaggccgtggaggcccacttggactccctcaagtctggggagatggctccggcgagg
ctcctggagctgtgccactgcgtgtacgaaacgggcagcaagaagctcgccaagcagctg
gtgaagaacctgcccgacacgctgagtctctgcggagctcagctgaccccgccggacgtc
tacgtgctgtggtacctcctgcaggacaccaaagccctgaaaaggcagttctgcctcgat
ctgcaggacacaggcatcactctcagtggtctgaaagagctcgttggactgaactgtgtc
acatcctacagggcacccttggcagacaccattaccatgtgggaagagatagagcagagt
ggggagtcggatctactgaggggagccaagaacaagctcacccttcaccccttcaaggcc
acccaggaagatcacatctgcaatctgacggtgctcattcagtcctgcagagatcctgca
tcactggaacatgatataccagctattagacaactcgagaagcttgattttgagttgggt
cccaatattggccctgtgatcttcccaaagcttgctcagatcctgcccaccctgggaagc
ctggtgcatttagacctggagaaaaacaagatcggcgacgtgggagctgagctgcttgct
gacgtgttgaattctttattgtcactgaaaaagctgaatctgtctcagaactcgattgga
gataagggactggagaaacttgcaaccgctcttgctgctacaccttctcttcaaagtctc
agtttgtacaataacttgattgctgaaaatggcgcagagagacttgctttggtccttcca
gagatgcagaccctgacagaccttgatgttggcttcaacaacttcactgatgttggagca
cagaagctgagcaacagcctgaaaagttgcccttggatgaagtctcttgggttgtggaac
cattgcataccatatggtatactccagcatctgcatcaacaggacaaaaggataaggatt
cagcattcttag
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integrated database retrieval system
