Sardina pilchardus (sardine): 134077326
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Entry
134077326 CDS
T10667
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134077326 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134077326 (xab2)
03041 Spliceosome [BR:
spil03041
]
134077326 (xab2)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134077326 (xab2)
Spliceosome [BR:
spil03041
]
Complex B
Other components
Prp19-related factors
134077326 (xab2)
Complex C
134077326 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
TPR_1
RPN7
Tcf25
Motif
Other DBs
NCBI-GeneID:
134077326
NCBI-ProteinID:
XP_062388846
LinkDB
All DBs
Position
3:complement(31629178..31637280)
Genome browser
AA seq
849 aa
AA seq
DB search
MPSLNGKSDVIFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNASKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGRCITDPSFEEVNNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRSRRSFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENTEEYID
YLHSVGRLDEAAVRLAAVVNDEHFVSKEGKSNYQLWHEMCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEDEDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPHQIINTYTEAVQTVDPIKATGKPHSLWVSFARFYEDNEQLEDARTIFEKATKVN
FKVVDDLSGVWCEYGEMELRHENYDQALHILRKATAIPARKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYALFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQSLDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHSR
DMCLRFADMEAKLGEIDRARAIYSYCSQICDPRITANFWQSWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATSNATGTVSDLAPGLGGVDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELTKQANPDEIDIDDEDEDEDQDQEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttccttgaacgggaaaagcgatgttatctttgaagaagatgatctcccgtatgag
gaggagatcatcaggaatccctactctgtcaagtgctggatgcgctacatagagttcaaa
cagaatgcctcaaaatcagtgctcaacatgatctatgagcgagctttgaaagagctcccg
ggaagttacaagctttggtacaactacttgagagagagaaggaaacaagtgaaaggaaga
tgcataacagacccatcatttgaggaggtgaacaactgccatgagagagcgctggtgttc
atgcacaaaatgcccaggatttggctggattactgtcagttcctggtgtctcagtccaag
atcaccaggagtcgccgctcgtttgaccgagccttgagagccctgcccatcacccagcac
ccacgcatctggcctctgtacctacgcttcgcaagaaacctgcccttgcccgagactgcc
atcagagtataccgccgctacctgaagctctcaccagagaatacagaggaatacatcgat
tacctgcattcagtcgggcgtctagacgaggcagctgtgcgtctagcggctgttgtgaat
gatgagcactttgtgtccaaagagggcaagtctaactaccagctgtggcacgagatgtgt
gacctgatctcccagaacccagacaaagtgaactcgctcaacgtgggcgctatcatccga
ggcggcctcacacgcttcacagaccagctgggaaagctgtggtgctccctggctgactac
tacatccgcagcggccattttgagaaggcaagagacgtatatgaggaggccatccagaca
gtggtgactgtgcgagacttcacccaggtgttcgacagctatgcccagtttgaggagagc
atgatcgcagccaaaatggagaccacttcagaaatgggaaaggatgaagatgaggacatt
gacctggagctgaggctggcccgcttcgagcagctcatcacccgccgcccgctgctgctc
aacagcgtcctgctgaggcagaacccccacaatgtgcacgagtggcacaagagagtcaag
ctgtacgaagggaaaccccaccagatcatcaacacgtatactgaggctgtgcagacggtg
gaccctattaaggccacagggaagccacattcgctctgggtctcctttgccaggttttac
gaagataacgaacaactagaagatgcacggaccatcttcgagaaggccaccaaggtgaac
ttcaaggtggtggacgacctgtcaggtgtgtggtgtgagtacggcgagatggagttgcga
cacgagaactacgaccaggcgctgcacatccttaggaaagccacagccattccggcaagg
aaagctgaatacttcgatgcgtcggagcctgtccaaaatcgagtgtacaagtctctcaaa
gtctggtcgatgttggctgacctagaggagagcttgggcactttccagtctacaaagtct
gtttatgaccgcatcattgacctgcggatagccacccctcagatcattattaattacgcc
ttgttcctggaggagcacaactactttgaggagagcttcaaggcgtatgaacgaggcatt
gccctcttcaagtggcccaatgtgtatgacatctggaacacgtatctgaccaagttcatc
gatcgctacggaggaaagaagctggagagagcgcgagacctatttgagcaatccctagat
ggctgccctgcaaagtttgccaaaaccatatacctcctgtatgccaagctggaagaggag
tacggtcttgcgcgccacgcgatggccgtgtacgagagagccacgcaagccgtggagacc
gaggagcgccatcaaatgttcaacatctacatcaagagagctgctgagatctacggcgtc
acgcacacaagagccatttaccagaaggccatagaggtccttcccgatgagcactccaga
gatatgtgtctgcgcttcgccgacatggaggcgaaactgggcgagatcgaccgcgccaga
gccatctattcctactgttcccagatctgtgatcccaggattacagctaacttctggcag
tcgtggaaggagtttgagattcgccacggcaacgaggacaccatccgcgagatgctgagg
atcaagcgaagcgtccaggccacgtacaacacgcaggtcaacttcatgtcctcgcagatg
ctcaaggccacctccaatgccaccggtacagtgtcggaccttgctcctggcctgggtgga
gtggacgatatgaagatgctggagcagaaggcacagcagctggctgcagaggctgagcag
gacaagcccaagcccaaggagaagatcctctttgtcaggagtgacacgtctcgcagcgaa
cttgcagaactgactaaacaggccaatccagacgagatcgacattgatgacgaggatgag
gacgaagatcaggatcaggagcctgatgaggtgcaactggaacagaagagtgtccccact
gctgtcttcggaggtctgaaggatgattga
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